Skin cancer
The upper left dot plot(s) shows the consistency between the cancer type related cell lines and their corresponding TCGA disease cohort based on Spearman correlation and normalized enrichment score (NES). In the lower left is a list of the cell lines ranked according to their similarity to the cancer type. By clicking on a cell line in the dot plot or in the ranked list lollipop plots showing the activity of cancer-related pathways inferred using PROGENy and CytoSig cytokines for that particular cell line will be displayed. For more details about the analysis see Methods summary and information about all cell lines can be found here.
Skin Cutaneous Melanoma (SKCM)
Explore the disease cohort in TCGA
| Ranking |
Cell line |
Corr |
NES |
| 1 |
Malme-3M |
0.83 |
2.36 |
| 2 |
Hs 939.T |
0.82 |
2.39 |
| 2 |
UACC-257 |
0.82 |
2.36 |
| 4 |
SK-MEL-30 |
0.82 |
2.26 |
| 5 |
HMY-1 |
0.81 |
2.3 |
| 6 |
COLO 783 |
0.81 |
2.33 |
| 6 |
HT-144 |
0.81 |
2.33 |
| 8 |
SK-MEL-28 |
0.81 |
2.25 |
| 9 |
G-361 |
0.81 |
2.27 |
| 10 |
COLO 829 |
0.82 |
2.22 |
| 11 |
WM1799 |
0.81 |
2.33 |
| 12 |
COLO 794 |
0.81 |
2.24 |
| 13 |
COLO 800 |
0.81 |
2.22 |
| 13 |
Hs 294T |
0.81 |
2.27 |
| 15 |
K029AX |
0.81 |
2.23 |
| 16 |
RVH-421 |
0.81 |
2.26 |
| 17 |
Hs 944.T |
0.81 |
2.21 |
| 18 |
SK-MEL-5 |
0.8 |
2.33 |
| 19 |
SK-MEL-24 |
0.81 |
2.16 |
| 20 |
Mel Ho |
0.81 |
2.15 |
| 20 |
COLO 792 |
0.81 |
2.18 |
| 22 |
IGR-37 |
0.8 |
2.25 |
| 22 |
SK-MEL-31 |
0.8 |
2.22 |
| 24 |
WM266-4 |
0.81 |
2.2 |
| 24 |
SK-MEL-3 |
0.8 |
2.25 |
| 24 |
SH-4 |
0.8 |
2.24 |
| 27 |
DEOC-1 |
0.81 |
2.2 |
| 27 |
IPC-298 |
0.8 |
2.21 |
| 29 |
MeWo |
0.8 |
2.2 |
| 30 |
C32 [Human melanoma] |
0.81 |
2.15 |
| 30 |
COLO 741 |
0.8 |
2.23 |
| 32 |
UCSD-242L |
0.8 |
2.21 |
| 33 |
WM88 |
0.81 |
2.09 |
| 33 |
A101D |
0.8 |
2.17 |
| 35 |
A2058 |
0.81 |
2.15 |
| 36 |
IGR-1 |
0.8 |
2.21 |
| 37 |
COLO 849 |
0.8 |
2.14 |
| 38 |
COLO 679 |
0.8 |
2.18 |
| 39 |
Hs 936.T |
0.8 |
2.2 |
| 40 |
WM983B |
0.8 |
2.09 |
| 41 |
WM115 |
0.79 |
2.17 |
| 41 |
UACC-62 |
0.8 |
2.16 |
| 43 |
SK-MEL-1 |
0.8 |
2.08 |
| 44 |
SK-MEL-2 |
0.79 |
2.14 |
| 44 |
Mel JuSo |
0.79 |
2.04 |
| 44 |
624-mel |
0.79 |
2.02 |
| 47 |
537-mel |
0.8 |
1.88 |
| 48 |
Hs 695T |
0.79 |
2.01 |
| 49 |
Hs 852.T |
0.79 |
1.96 |
| 50 |
Mel 928 |
0.79 |
1.89 |
| 51 |
RPMI-7951 |
0.79 |
1.61 |
| 52 |
SK-MEL-23 |
0.78 |
2 |
| 52 |
888-mel |
0.78 |
1.93 |
| 54 |
WM793 |
0.79 |
1.77 |
| 55 |
MDA-MB-435 |
0.78 |
1.75 |
| 56 |
IGR-39 |
0.78 |
1.67 |
| 57 |
A-375 |
0.78 |
1.7 |
| 57 |
MDA-MB-435S |
0.77 |
1.76 |
| 59 |
HMCB |
0.76 |
1.69 |
| 60 |
A-431 |
0.77 |
0.85 |
| 61 |
LOX-IMVI |
0.75 |
1.17 |
| 62 |
CJM [Human melanoma] |
0.75 |
0.8 |
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