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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
13.5
nTPM
Schmiedel:
25.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
1.1
HPA sample
nTPM
gdT-cell nTPM: 0.6
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.0
P10809_1007
0.8
P10809_1022
0.5
P10809_1041
0.0
P10809_1060
0.8
P10809_1077
0.6
P10809_1098
0.6
MAIT T-cell nTPM: 0.4
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.1
P10809_1006
0.8
P10809_1024
0.2
P10809_1043
0.6
P10809_1062
0.3
P10809_1083
0.2
P10809_1097
0.1
Memory CD4 T-cell nTPM: 0.5
Samples: 6
Max nTPM: 0.7
Min nTPM: 0.0
P10809_1014
0.6
P10809_1026
0.0
P10809_1045
0.6
P10809_1064
0.7
P10809_1086
0.5
P10809_1113
0.3
Memory CD8 T-cell nTPM: 1.1
Samples: 5
Max nTPM: 2.9
Min nTPM: 0.4
P10809_1012
0.6
P10809_1027
0.4
P10809_1046
0.8
P10809_1065
2.9
P10809_1111
1.0
Naive CD4 T-cell nTPM: 0.3
Samples: 6
Max nTPM: 0.7
Min nTPM: 0.1
P10809_1015
0.7
P10809_1030
0.2
P10809_1049
0.2
P10809_1068
0.1
P10809_1085
0.2
P10809_1112
0.1
Naive CD8 T-cell nTPM: 0.6
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.2
P10809_1016
0.7
P10809_1031
0.2
P10809_1050
0.4
P10809_1069
0.3
P10809_1087
1.0
P10809_1110
0.9
T-reg nTPM: 1.0
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.0
P10809_1018
0.2
P10809_1037
1.7
P10809_1056
2.4
P10809_1075
0.6
P10809_1094
0.0
P10809_1106
0.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
13.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 7.2
Samples: 4
Max nTPM: 9.4
Min nTPM: 5.0
RHH5202_R3573
8.9
RHH5230_R3602
5.0
RHH5259_R3631
5.4
RHH5288_R3660
9.4
Effector memory CD8 T-cell nTPM: 12.1
Samples: 4
Max nTPM: 13.7
Min nTPM: 8.6
RHH5203_R3574
13.7
RHH5231_R3603
12.5
RHH5260_R3632
8.6
RHH5289_R3661
13.7
MAIT T-cell nTPM: 11.6
Samples: 4
Max nTPM: 15.6
Min nTPM: 5.5
RHH5233_R3605
13.9
RHH5205_R3576
5.5
RHH5262_R3634
15.6
RHH5297_R3663
11.2
Memory CD4 T-cell TFH nTPM: 7.5
Samples: 4
Max nTPM: 9.4
Min nTPM: 4.6
RHH5300_R3666
6.8
RHH5236_R3608
9.1
RHH5265_R3637
4.6
RHH5208_R3579
9.4
Memory CD4 T-cell Th1 nTPM: 7.4
Samples: 4
Max nTPM: 9.5
Min nTPM: 5.0
RHH5210_R3581
5.0
RHH5302_R3668
7.9
RHH5238_R3610
9.5
RHH5267_R3639
7.2
Memory CD4 T-cell Th1/Th17 nTPM: 8.1
Samples: 4
Max nTPM: 10.4
Min nTPM: 5.3
RHH5303_R3669
6.7
RHH5211_R3582
5.3
RHH5239_R3611
10.4
RHH5268_R3640
9.9
Memory CD4 T-cell Th17 nTPM: 9.4
Samples: 4
Max nTPM: 13.1
Min nTPM: 6.7
RHH5304_R3670
13.1
RHH5212_R3583
7.3
RHH5240_R3612
10.4
RHH5269_R3641
6.7
Memory CD4 T-cell Th2 nTPM: 6.6
Samples: 4
Max nTPM: 8.4
Min nTPM: 4.4
RHH5305_R3671
5.1
RHH5213_R3584
4.4
RHH5241_R3613
8.3
RHH5270_R3642
8.4
Naive CD4 T-cell nTPM: 3.1
Samples: 4
Max nTPM: 4.7
Min nTPM: 1.2
RHH5306_R3672
3.2
RHH5214_R3585
1.2
RHH5242_R3614
4.7
RHH5271_R3643
3.2
Naive CD8 T-cell nTPM: 8.9
Samples: 4
Max nTPM: 18.0
Min nTPM: 4.1
RHH5201_R3572
8.1
RHH5229_R3601
18.0
RHH5258_R3630
4.1
RHH5287_R3659
5.4
Non-Vd2 gdTCR nTPM: 12.0
Samples: 4
Max nTPM: 16.8
Min nTPM: 6.6
RHH5235_R3607
12.8
RHH5264_R3636
11.8
RHH5207_R3578
16.8
RHH5299_R3665
6.6
T-reg nTPM: 5.3
Samples: 4
Max nTPM: 6.7
Min nTPM: 4.3
RHH5301_R3667
4.3
RHH5237_R3609
4.5
RHH5266_R3638
6.7
RHH5209_R3580
5.7
Terminal effector memory CD4 T-cell nTPM: 12.4
Samples: 2
Max nTPM: 18.7
Min nTPM: 6.0
RHH5243_R3615
18.7
RHH5272_R3644
6.0
Terminal effector memory CD8 T-cell nTPM: 13.3
Samples: 4
Max nTPM: 18.2
Min nTPM: 7.8
RHH5232_R3604
18.2
RHH5204_R3575
9.3
RHH5261_R3633
7.8
RHH5296_R3662
17.8
Vd2 gdTCR nTPM: 13.5
Samples: 4
Max nTPM: 17.5
Min nTPM: 8.6
RHH5234_R3606
8.6
RHH5206_R3577
17.5
RHH5263_R3635
15.8
RHH5298_R3664
11.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
