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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.1
nTPM
Monaco:
59.5
nTPM
Schmiedel:
18.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
13.1
HPA sample
nTPM
gdT-cell nTPM: 9.6
Samples: 6
Max nTPM: 16.0
Min nTPM: 5.3
P10809_1007
5.3
P10809_1022
5.8
P10809_1041
7.7
P10809_1060
7.0
P10809_1077
16.0
P10809_1098
15.5
MAIT T-cell nTPM: 13.1
Samples: 6
Max nTPM: 23.2
Min nTPM: 8.4
P10809_1006
8.4
P10809_1024
13.1
P10809_1043
10.0
P10809_1062
10.2
P10809_1083
23.2
P10809_1097
13.7
Memory CD4 T-cell nTPM: 5.2
Samples: 6
Max nTPM: 12.2
Min nTPM: 1.4
P10809_1014
1.4
P10809_1026
1.7
P10809_1045
5.1
P10809_1064
3.7
P10809_1086
12.2
P10809_1113
6.9
Memory CD8 T-cell nTPM: 7.8
Samples: 5
Max nTPM: 12.6
Min nTPM: 3.8
P10809_1012
3.8
P10809_1027
8.8
P10809_1046
7.2
P10809_1065
6.4
P10809_1111
12.6
Naive CD4 T-cell nTPM: 1.2
Samples: 6
Max nTPM: 4.5
Min nTPM: 0.4
P10809_1015
0.5
P10809_1030
0.4
P10809_1049
0.5
P10809_1068
0.4
P10809_1085
4.5
P10809_1112
0.7
Naive CD8 T-cell nTPM: 7.0
Samples: 6
Max nTPM: 21.0
Min nTPM: 0.7
P10809_1016
0.7
P10809_1031
5.8
P10809_1050
6.1
P10809_1069
3.8
P10809_1087
21.0
P10809_1110
4.7
T-reg nTPM: 10.1
Samples: 6
Max nTPM: 16.3
Min nTPM: 6.4
P10809_1018
6.4
P10809_1037
6.7
P10809_1056
9.9
P10809_1075
9.9
P10809_1094
11.1
P10809_1106
16.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
59.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 13.5
Samples: 4
Max nTPM: 19.6
Min nTPM: 7.1
RHH5202_R3573
7.1
RHH5230_R3602
16.6
RHH5259_R3631
10.5
RHH5288_R3660
19.6
Effector memory CD8 T-cell nTPM: 38.8
Samples: 4
Max nTPM: 50.6
Min nTPM: 25.6
RHH5203_R3574
25.6
RHH5231_R3603
41.8
RHH5260_R3632
37.2
RHH5289_R3661
50.6
MAIT T-cell nTPM: 58.2
Samples: 4
Max nTPM: 72.6
Min nTPM: 47.2
RHH5233_R3605
72.6
RHH5205_R3576
47.2
RHH5262_R3634
57.8
RHH5297_R3663
55.1
Memory CD4 T-cell TFH nTPM: 9.1
Samples: 4
Max nTPM: 13.5
Min nTPM: 6.0
RHH5300_R3666
8.2
RHH5236_R3608
13.5
RHH5265_R3637
6.0
RHH5208_R3579
8.6
Memory CD4 T-cell Th1 nTPM: 8.9
Samples: 4
Max nTPM: 15.8
Min nTPM: 5.5
RHH5210_R3581
5.7
RHH5302_R3668
8.6
RHH5238_R3610
15.8
RHH5267_R3639
5.5
Memory CD4 T-cell Th1/Th17 nTPM: 12.3
Samples: 4
Max nTPM: 17.5
Min nTPM: 7.7
RHH5303_R3669
17.5
RHH5211_R3582
7.7
RHH5239_R3611
14.3
RHH5268_R3640
9.5
Memory CD4 T-cell Th17 nTPM: 15.6
Samples: 4
Max nTPM: 31.4
Min nTPM: 7.5
RHH5304_R3670
31.4
RHH5212_R3583
7.5
RHH5240_R3612
13.9
RHH5269_R3641
9.6
Memory CD4 T-cell Th2 nTPM: 7.8
Samples: 4
Max nTPM: 11.2
Min nTPM: 5.3
RHH5305_R3671
8.4
RHH5213_R3584
6.3
RHH5241_R3613
11.2
RHH5270_R3642
5.3
Naive CD4 T-cell nTPM: 2.5
Samples: 4
Max nTPM: 4.0
Min nTPM: 1.6
RHH5306_R3672
2.4
RHH5214_R3585
2.1
RHH5242_R3614
1.6
RHH5271_R3643
4.0
Naive CD8 T-cell nTPM: 4.9
Samples: 4
Max nTPM: 7.3
Min nTPM: 3.7
RHH5201_R3572
4.3
RHH5229_R3601
3.7
RHH5258_R3630
4.1
RHH5287_R3659
7.3
Non-Vd2 gdTCR nTPM: 52.7
Samples: 4
Max nTPM: 55.4
Min nTPM: 49.2
RHH5235_R3607
49.2
RHH5264_R3636
51.2
RHH5207_R3578
54.9
RHH5299_R3665
55.4
T-reg nTPM: 12.7
Samples: 4
Max nTPM: 14.9
Min nTPM: 10.1
RHH5301_R3667
13.4
RHH5237_R3609
14.9
RHH5266_R3638
12.3
RHH5209_R3580
10.1
Terminal effector memory CD4 T-cell nTPM: 44.2
Samples: 2
Max nTPM: 54.2
Min nTPM: 34.2
RHH5243_R3615
54.2
RHH5272_R3644
34.2
Terminal effector memory CD8 T-cell nTPM: 59.5
Samples: 4
Max nTPM: 66.3
Min nTPM: 42.2
RHH5232_R3604
65.9
RHH5204_R3575
42.2
RHH5261_R3633
66.3
RHH5296_R3662
63.5
Vd2 gdTCR nTPM: 29.6
Samples: 4
Max nTPM: 37.6
Min nTPM: 24.3
RHH5234_R3606
24.3
RHH5206_R3577
30.5
RHH5263_R3635
37.6
RHH5298_R3664
26.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
