HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:131.5 nTPM
HPA Brain:79.1 nTPM
GTEx:131.5 nTPM
FANTOM5:123.5 Scaled Tags Per Million
Pig:96.3 nTPM
Mouse:474.0 nTPM
Allen mouse:8.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA071684
Glial cells Low
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 79.1
Sample id Sample description nTPM
Hippocampus
nTPM: 72.9
1898 Male, age 80, left hemisphere 96.3
2529 Female, age 94, left hemisphere 72.4
2148 Female, age 91, left hemisphere 70.8
1911 Female, age 85, right hemisphere 69.1
2621 Female, age 67, right hemisphere 68.1
1855 Male, age 76, left hemisphere 60.5
Dentate gyrus
nTPM: 68.2
2528 Male, age 74, both hemispheres 82.0
1927 Female, age 91, both hemispheres 79.6
2530 Female, age 94, left hemisphere 70.5
2010 Male, age 76, both hemispheres 67.2
2246 Female, age 85, both hemispheres 61.2
2531 Female, age 67, both hemispheres 48.7
Entorhinal gyrus
nTPM: 64.4
2117 Female, age 91, right hemisphere 77.7
1938 Female, age 85, left hemisphere 71.3
2764 Male, age 80, right hemisphere 67.3
2686 Male, age 75, right hemisphere 65.6
1787 Male, age 76, left hemisphere 60.8
2613 Female, age 94, left hemisphere 43.9
Hippocampus, CA1
nTPM: 77.1
2749 Male, age 80, left hemisphere 100.8
2527 Male, age 74, both hemispheres 96.8
1873 Female, age 85, both hemispheres 68.2
2082 Female, age 91, right hemisphere 68.0
2045 Male, age 76, both hemispheres 51.6
Hippocampus, CA2
nTPM: 79.1
2249 Male, age 74, both hemispheres 101.6
1963 Male, age 80, left hemisphere 86.7
1892 Male, age 76, both hemispheres 85.9
2437 Female, age 94, left hemisphere 70.9
2113 Female, age 91, right hemisphere 65.8
1940 Female, age 85, left hemisphere 63.7
Hippocampus, CA3
nTPM: 73.2
2436 Male, age 74, both hemispheres 101.3
1867 Male, age 76, both hemispheres 83.3
1891 Female, age 85, both hemispheres 75.0
2137 Male, age 80, left hemisphere 73.7
2861 Female, age 67, both hemispheres 54.8
2620 Female, age 94, left hemisphere 50.9
Parahippocampal cortex
nTPM: 69.2
2250 Female, age 67, right hemisphere 86.5
1990 Female, age 91, right hemisphere 79.8
1933 Female, age 85, both hemispheres 75.5
1850 Male, age 80, both hemispheres 73.5
2245 Female, age 91, both hemispheres 71.4
2692 Male, age 74, both hemispheres 67.3
2693 Female, age 94, both hemispheres 62.1
2622 Female, age 67, right hemisphere 60.0
2532 Female, age 72, left hemisphere 58.3
2018 Male, age 76, both hemispheres 57.8
Perirhinal gyrus
nTPM: 71.5
1847 Female, age 91, left hemisphere 88.0
1794 Male, age 80, right hemisphere 79.7
1841 Female, age 85, right hemisphere 72.3
2521 Female, age 94, right hemisphere 66.7
2848 Male, age 76, right hemisphere 50.7
Subiculum
nTPM: 69.3
2619 Male, age 74, both hemispheres 80.9
1901 Male, age 80, both hemispheres 77.2
1977 Female, age 85, both hemispheres 73.9
2729 Female, age 91, right hemisphere 72.3
2042 Male, age 76, both hemispheres 60.3
2438 Female, age 94, left hemisphere 51.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 131.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 131.5
Samples: 197

Max nTPM: 218.4
Min nTPM: 78.5
Std nTPM: 26.9
Median nTPM: 126.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 218.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 210.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 195.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 193.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 189.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 187.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 186.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 183.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 181.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 178.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 176.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 123.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 123.5
FF:10169-103B7 60 years, female 154.7
FF:10153-102I9 76 years, female 92.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 96.3
Pig sample Sample description nTPM
Subiculum
nTPM: 69.5
Samples: 4

Max nTPM: 93.3
Min nTPM: 57.0
Sample A Female 93.3
Sample B Female 70.1
Sample C Male 57.0
Sample D Male 57.6
Dorsal hippocampus
nTPM: 96.3
Samples: 4

Max nTPM: 122.0
Min nTPM: 74.6
Sample A Female 122.0
Sample B Female 95.2
Sample C Male 93.4
Sample D Male 74.6
Entorhinal cortex
nTPM: 78.1
Samples: 4

Max nTPM: 110.1
Min nTPM: 62.0
Sample A Female 71.1
Sample B Female 110.1
Sample C Male 69.0
Sample D Male 62.0
Ventral hippocampus
nTPM: 87.8
Samples: 4

Max nTPM: 99.1
Min nTPM: 64.5
Sample A Female 99.1
Sample B Female 64.5
Sample C Male 98.4
Sample D Male 89.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 474.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 386.2
Samples: 4

Max nTPM: 406.2
Min nTPM: 376.4
Sample A Male 376.4
Sample B Male 381.1
Sample C Female 406.2
Sample D Female 381.1
Hippocampal formation
nTPM: 474.1
Samples: 4

Max nTPM: 488.7
Min nTPM: 440.7
Sample A Male 484.5
Sample B Male 440.7
Sample C Female 488.7
Sample D Female 482.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.8
2591 Antisense, RP_040507_01_D05, Mouse strain C57BL/6J (56 days, male) 8.8
2592 Antisense, RP_040507_01_D05, Mouse strain C57BL/6J (56 days, male) 7.0

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