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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
129.1
nTPM
Monaco:
109.2
nTPM
Schmiedel:
86.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
129.1
HPA sample
nTPM
gdT-cell nTPM: 74.5
Samples: 6
Max nTPM: 91.8
Min nTPM: 49.5
P10809_1007
49.5
P10809_1022
84.4
P10809_1041
91.8
P10809_1060
72.0
P10809_1077
72.7
P10809_1098
76.5
MAIT T-cell nTPM: 68.3
Samples: 6
Max nTPM: 87.5
Min nTPM: 51.3
P10809_1006
51.3
P10809_1024
87.5
P10809_1043
86.4
P10809_1062
74.5
P10809_1083
56.2
P10809_1097
53.9
Memory CD4 T-cell nTPM: 61.0
Samples: 6
Max nTPM: 77.7
Min nTPM: 46.9
P10809_1014
46.9
P10809_1026
67.6
P10809_1045
77.7
P10809_1064
64.9
P10809_1086
50.4
P10809_1113
58.7
Memory CD8 T-cell nTPM: 78.5
Samples: 5
Max nTPM: 92.6
Min nTPM: 60.0
P10809_1012
60.0
P10809_1027
73.2
P10809_1046
92.6
P10809_1065
91.3
P10809_1111
75.3
Naive CD4 T-cell nTPM: 129.1
Samples: 6
Max nTPM: 221.6
Min nTPM: 66.6
P10809_1015
66.6
P10809_1030
89.9
P10809_1049
221.6
P10809_1068
147.0
P10809_1085
114.1
P10809_1112
135.2
Naive CD8 T-cell nTPM: 115.6
Samples: 6
Max nTPM: 152.7
Min nTPM: 67.1
P10809_1016
92.5
P10809_1031
103.2
P10809_1050
131.0
P10809_1069
147.0
P10809_1087
67.1
P10809_1110
152.7
T-reg nTPM: 74.8
Samples: 6
Max nTPM: 99.6
Min nTPM: 52.4
P10809_1018
52.4
P10809_1037
82.9
P10809_1056
99.6
P10809_1075
92.5
P10809_1094
62.7
P10809_1106
58.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
109.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 55.4
Samples: 4
Max nTPM: 70.3
Min nTPM: 42.1
RHH5202_R3573
70.3
RHH5230_R3602
60.6
RHH5259_R3631
42.1
RHH5288_R3660
48.4
Effector memory CD8 T-cell nTPM: 69.0
Samples: 4
Max nTPM: 81.0
Min nTPM: 63.0
RHH5203_R3574
81.0
RHH5231_R3603
63.0
RHH5260_R3632
67.4
RHH5289_R3661
64.5
MAIT T-cell nTPM: 59.0
Samples: 4
Max nTPM: 67.8
Min nTPM: 50.2
RHH5233_R3605
52.7
RHH5205_R3576
67.8
RHH5262_R3634
50.2
RHH5297_R3663
65.2
Memory CD4 T-cell TFH nTPM: 54.6
Samples: 4
Max nTPM: 75.4
Min nTPM: 35.7
RHH5300_R3666
50.4
RHH5236_R3608
56.8
RHH5265_R3637
35.7
RHH5208_R3579
75.4
Memory CD4 T-cell Th1 nTPM: 60.8
Samples: 4
Max nTPM: 87.3
Min nTPM: 40.4
RHH5210_R3581
87.3
RHH5302_R3668
62.1
RHH5238_R3610
40.4
RHH5267_R3639
53.2
Memory CD4 T-cell Th1/Th17 nTPM: 45.3
Samples: 4
Max nTPM: 62.4
Min nTPM: 31.0
RHH5303_R3669
62.4
RHH5211_R3582
43.6
RHH5239_R3611
31.0
RHH5268_R3640
44.3
Memory CD4 T-cell Th17 nTPM: 52.5
Samples: 4
Max nTPM: 61.7
Min nTPM: 43.1
RHH5304_R3670
61.7
RHH5212_R3583
52.7
RHH5240_R3612
52.5
RHH5269_R3641
43.1
Memory CD4 T-cell Th2 nTPM: 58.2
Samples: 4
Max nTPM: 64.1
Min nTPM: 53.0
RHH5305_R3671
64.1
RHH5213_R3584
62.0
RHH5241_R3613
53.8
RHH5270_R3642
53.0
Naive CD4 T-cell nTPM: 86.7
Samples: 4
Max nTPM: 101.3
Min nTPM: 53.5
RHH5306_R3672
101.3
RHH5214_R3585
97.9
RHH5242_R3614
53.5
RHH5271_R3643
94.1
Naive CD8 T-cell nTPM: 109.2
Samples: 4
Max nTPM: 135.9
Min nTPM: 51.5
RHH5201_R3572
119.8
RHH5229_R3601
51.5
RHH5258_R3630
135.9
RHH5287_R3659
129.5
Non-Vd2 gdTCR nTPM: 68.9
Samples: 4
Max nTPM: 91.6
Min nTPM: 56.6
RHH5235_R3607
61.1
RHH5264_R3636
66.3
RHH5207_R3578
91.6
RHH5299_R3665
56.6
T-reg nTPM: 58.7
Samples: 4
Max nTPM: 63.0
Min nTPM: 53.2
RHH5301_R3667
53.2
RHH5237_R3609
63.0
RHH5266_R3638
62.7
RHH5209_R3580
56.0
Terminal effector memory CD4 T-cell nTPM: 64.8
Samples: 2
Max nTPM: 65.3
Min nTPM: 64.2
RHH5243_R3615
65.3
RHH5272_R3644
64.2
Terminal effector memory CD8 T-cell nTPM: 69.4
Samples: 4
Max nTPM: 74.1
Min nTPM: 63.5
RHH5232_R3604
74.1
RHH5204_R3575
66.4
RHH5261_R3633
63.5
RHH5296_R3662
73.4
Vd2 gdTCR nTPM: 64.9
Samples: 4
Max nTPM: 72.2
Min nTPM: 54.5
RHH5234_R3606
64.4
RHH5206_R3577
72.2
RHH5263_R3635
68.5
RHH5298_R3664
54.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
