HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:34.8 nTPM
HPA Brain:57.7 nTPM
GTEx:34.8 nTPM
FANTOM5:160.4 Scaled Tags Per Million
Pig:53.6 nTPM
Mouse:91.0 nTPM
Allen mouse:5.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008287
Glial cells Low
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 57.7
Sample id Sample description nTPM
Hippocampus
nTPM: 50.5
1855 Male, age 76, left hemisphere 62.1
1898 Male, age 80, left hemisphere 55.8
2148 Female, age 91, left hemisphere 50.7
2621 Female, age 67, right hemisphere 48.2
2529 Female, age 94, left hemisphere 45.7
1911 Female, age 85, right hemisphere 40.9
Dentate gyrus
nTPM: 48.5
2531 Female, age 67, both hemispheres 53.9
2246 Female, age 85, both hemispheres 50.5
1927 Female, age 91, both hemispheres 49.2
2528 Male, age 74, both hemispheres 49.0
2530 Female, age 94, left hemisphere 47.0
2010 Male, age 76, both hemispheres 41.5
Entorhinal gyrus
nTPM: 48.9
2764 Male, age 80, right hemisphere 61.5
1938 Female, age 85, left hemisphere 49.1
1787 Male, age 76, left hemisphere 46.7
2613 Female, age 94, left hemisphere 46.7
2117 Female, age 91, right hemisphere 45.5
2686 Male, age 75, right hemisphere 43.7
Hippocampus, CA1
nTPM: 54.4
2749 Male, age 80, left hemisphere 72.6
2082 Female, age 91, right hemisphere 56.9
2527 Male, age 74, both hemispheres 50.6
2045 Male, age 76, both hemispheres 46.0
1873 Female, age 85, both hemispheres 45.8
Hippocampus, CA2
nTPM: 48.7
1892 Male, age 76, both hemispheres 55.9
2113 Female, age 91, right hemisphere 48.9
1940 Female, age 85, left hemisphere 48.8
1963 Male, age 80, left hemisphere 46.9
2249 Male, age 74, both hemispheres 46.2
2437 Female, age 94, left hemisphere 45.3
Hippocampus, CA3
nTPM: 53.9
2137 Male, age 80, left hemisphere 65.7
2861 Female, age 67, both hemispheres 60.5
2620 Female, age 94, left hemisphere 59.6
2436 Male, age 74, both hemispheres 50.1
1867 Male, age 76, both hemispheres 47.1
1891 Female, age 85, both hemispheres 40.5
Parahippocampal cortex
nTPM: 48.0
1850 Male, age 80, both hemispheres 58.7
2622 Female, age 67, right hemisphere 52.6
2245 Female, age 91, both hemispheres 51.5
2532 Female, age 72, left hemisphere 46.9
1933 Female, age 85, both hemispheres 46.8
2018 Male, age 76, both hemispheres 46.6
1990 Female, age 91, right hemisphere 46.4
2692 Male, age 74, both hemispheres 44.9
2693 Female, age 94, both hemispheres 43.5
2250 Female, age 67, right hemisphere 42.3
Perirhinal gyrus
nTPM: 57.7
1794 Male, age 80, right hemisphere 68.9
1847 Female, age 91, left hemisphere 61.0
2848 Male, age 76, right hemisphere 53.8
1841 Female, age 85, right hemisphere 53.1
2521 Female, age 94, right hemisphere 51.7
Subiculum
nTPM: 48.1
2438 Female, age 94, left hemisphere 53.4
2619 Male, age 74, both hemispheres 51.9
1901 Male, age 80, both hemispheres 49.7
2729 Female, age 91, right hemisphere 45.2
1977 Female, age 85, both hemispheres 44.2
2042 Male, age 76, both hemispheres 44.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.8
Samples: 197

Max nTPM: 71.5
Min nTPM: 9.8
Std nTPM: 11.0
Median nTPM: 33.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 71.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 71.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 70.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 65.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 61.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 60.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 58.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 57.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 57.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 55.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 54.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 160.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 160.4
FF:10169-103B7 60 years, female 201.4
FF:10153-102I9 76 years, female 119.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 53.6
Pig sample Sample description nTPM
Subiculum
nTPM: 47.7
Samples: 4

Max nTPM: 57.8
Min nTPM: 38.6
Sample A Female 57.8
Sample B Female 47.4
Sample C Male 47.0
Sample D Male 38.6
Dorsal hippocampus
nTPM: 52.8
Samples: 4

Max nTPM: 64.8
Min nTPM: 42.3
Sample A Female 64.8
Sample B Female 54.5
Sample C Male 49.7
Sample D Male 42.3
Entorhinal cortex
nTPM: 43.8
Samples: 4

Max nTPM: 45.1
Min nTPM: 41.5
Sample A Female 45.1
Sample B Female 43.8
Sample C Male 44.9
Sample D Male 41.5
Ventral hippocampus
nTPM: 53.6
Samples: 4

Max nTPM: 66.5
Min nTPM: 40.8
Sample A Female 55.0
Sample B Female 40.8
Sample C Male 66.5
Sample D Male 52.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 91.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 80.1
Samples: 4

Max nTPM: 87.6
Min nTPM: 70.2
Sample A Male 79.4
Sample B Male 70.2
Sample C Female 87.6
Sample D Female 83.3
Hippocampal formation
nTPM: 91.0
Samples: 4

Max nTPM: 98.1
Min nTPM: 84.7
Sample A Male 84.7
Sample B Male 85.4
Sample C Female 95.7
Sample D Female 98.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.5
68797489 Antisense, RP_050125_02_C06, Mouse strain C57BL/6J (56 days, male) 5.5

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