HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.0 nTPM
HPA Brain:44.8 nTPM
GTEx:42.0 nTPM
FANTOM5:76.1 Scaled Tags Per Million
Pig:58.6 nTPM
Mouse:310.3 nTPM
Allen mouse:27.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Hippocampus
nTPM: 39.3
1855 Male, age 76, left hemisphere 43.3
1898 Male, age 80, left hemisphere 43.0
2621 Female, age 67, right hemisphere 40.2
2148 Female, age 91, left hemisphere 37.0
2529 Female, age 94, left hemisphere 36.4
1911 Female, age 85, right hemisphere 36.0
Dentate gyrus
nTPM: 39.8
2010 Male, age 76, both hemispheres 45.4
2530 Female, age 94, left hemisphere 44.5
2246 Female, age 85, both hemispheres 40.6
1927 Female, age 91, both hemispheres 39.8
2528 Male, age 74, both hemispheres 37.3
2531 Female, age 67, both hemispheres 31.3
Entorhinal gyrus
nTPM: 36.8
2117 Female, age 91, right hemisphere 41.3
1938 Female, age 85, left hemisphere 38.4
2764 Male, age 80, right hemisphere 38.4
1787 Male, age 76, left hemisphere 36.3
2613 Female, age 94, left hemisphere 35.3
2686 Male, age 75, right hemisphere 31.2
Hippocampus, CA1
nTPM: 44.8
2749 Male, age 80, left hemisphere 69.7
1873 Female, age 85, both hemispheres 42.5
2527 Male, age 74, both hemispheres 40.2
2045 Male, age 76, both hemispheres 38.3
2082 Female, age 91, right hemisphere 33.5
Hippocampus, CA2
nTPM: 41.5
1892 Male, age 76, both hemispheres 55.0
1963 Male, age 80, left hemisphere 55.0
1940 Female, age 85, left hemisphere 37.2
2249 Male, age 74, both hemispheres 37.0
2437 Female, age 94, left hemisphere 33.0
2113 Female, age 91, right hemisphere 31.8
Hippocampus, CA3
nTPM: 37.1
2137 Male, age 80, left hemisphere 52.5
1867 Male, age 76, both hemispheres 40.7
2436 Male, age 74, both hemispheres 34.2
1891 Female, age 85, both hemispheres 34.1
2620 Female, age 94, left hemisphere 31.7
2861 Female, age 67, both hemispheres 29.4
Parahippocampal cortex
nTPM: 34.5
2532 Female, age 72, left hemisphere 38.4
1933 Female, age 85, both hemispheres 38.3
1850 Male, age 80, both hemispheres 36.2
2245 Female, age 91, both hemispheres 36.2
2692 Male, age 74, both hemispheres 35.3
2693 Female, age 94, both hemispheres 34.7
2250 Female, age 67, right hemisphere 33.7
1990 Female, age 91, right hemisphere 33.3
2018 Male, age 76, both hemispheres 31.0
2622 Female, age 67, right hemisphere 27.7
Perirhinal gyrus
nTPM: 37.4
2521 Female, age 94, right hemisphere 44.7
1847 Female, age 91, left hemisphere 37.1
1794 Male, age 80, right hemisphere 35.8
2848 Male, age 76, right hemisphere 35.3
1841 Female, age 85, right hemisphere 34.0
Subiculum
nTPM: 39.2
1901 Male, age 80, both hemispheres 45.4
2438 Female, age 94, left hemisphere 44.6
2042 Male, age 76, both hemispheres 40.4
1977 Female, age 85, both hemispheres 38.7
2729 Female, age 91, right hemisphere 33.7
2619 Male, age 74, both hemispheres 32.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 42.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.0
Samples: 197

Max nTPM: 70.4
Min nTPM: 9.8
Std nTPM: 8.7
Median nTPM: 41.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 70.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 63.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 63.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 62.1
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 61.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 60.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 59.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 58.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 57.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 57.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 56.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 76.1
FF:10169-103B7 60 years, female 88.2
FF:10153-102I9 76 years, female 64.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 58.6
Pig sample Sample description nTPM
Subiculum
nTPM: 37.5
Samples: 4

Max nTPM: 40.9
Min nTPM: 33.3
Sample A Female 40.9
Sample B Female 40.0
Sample C Male 33.3
Sample D Male 35.7
Dorsal hippocampus
nTPM: 58.6
Samples: 4

Max nTPM: 75.9
Min nTPM: 44.9
Sample A Female 75.9
Sample B Female 66.0
Sample C Male 47.7
Sample D Male 44.9
Entorhinal cortex
nTPM: 42.7
Samples: 4

Max nTPM: 56.9
Min nTPM: 36.1
Sample A Female 41.4
Sample B Female 56.9
Sample C Male 36.1
Sample D Male 36.2
Ventral hippocampus
nTPM: 47.4
Samples: 4

Max nTPM: 54.2
Min nTPM: 39.7
Sample A Female 54.2
Sample B Female 39.7
Sample C Male 47.8
Sample D Male 47.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 310.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 307.2
Samples: 4

Max nTPM: 318.6
Min nTPM: 294.2
Sample A Male 299.0
Sample B Male 316.9
Sample C Female 294.2
Sample D Female 318.6
Hippocampal formation
nTPM: 310.3
Samples: 4

Max nTPM: 331.3
Min nTPM: 292.0
Sample A Male 324.6
Sample B Male 292.0
Sample C Female 331.3
Sample D Female 293.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 27.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 27.0
356858 Antisense, RP_040617_01_H08, Mouse strain C57BL/6J (56 days, male) 27.0
68192994 Antisense, RP_040617_01_H08, Mouse strain C57BL/6J (56 days, male) 24.5

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