HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:51.1 nTPM
HPA Brain:58.3 nTPM
GTEx:51.1 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:19.9 nTPM
Allen mouse:12.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040473
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 58.3
Sample id Sample description nTPM
Hippocampus
nTPM: 38.7
2529 Female, age 94, left hemisphere 49.2
1911 Female, age 85, right hemisphere 49.1
2621 Female, age 67, right hemisphere 38.8
2148 Female, age 91, left hemisphere 32.6
1855 Male, age 76, left hemisphere 31.5
1898 Male, age 80, left hemisphere 31.1
Dentate gyrus
nTPM: 37.8
2530 Female, age 94, left hemisphere 52.9
2528 Male, age 74, both hemispheres 41.2
2010 Male, age 76, both hemispheres 37.0
2246 Female, age 85, both hemispheres 35.8
2531 Female, age 67, both hemispheres 32.6
1927 Female, age 91, both hemispheres 27.1
Entorhinal gyrus
nTPM: 41.5
2117 Female, age 91, right hemisphere 71.2
2764 Male, age 80, right hemisphere 49.6
2613 Female, age 94, left hemisphere 37.5
2686 Male, age 75, right hemisphere 35.0
1938 Female, age 85, left hemisphere 32.1
1787 Male, age 76, left hemisphere 23.8
Hippocampus, CA1
nTPM: 30.3
2527 Male, age 74, both hemispheres 42.5
2082 Female, age 91, right hemisphere 40.9
1873 Female, age 85, both hemispheres 33.7
2749 Male, age 80, left hemisphere 24.3
2045 Male, age 76, both hemispheres 10.3
Hippocampus, CA2
nTPM: 44.5
2249 Male, age 74, both hemispheres 67.3
1963 Male, age 80, left hemisphere 51.3
1940 Female, age 85, left hemisphere 46.1
2437 Female, age 94, left hemisphere 43.3
2113 Female, age 91, right hemisphere 41.0
1892 Male, age 76, both hemispheres 18.1
Hippocampus, CA3
nTPM: 43.1
2436 Male, age 74, both hemispheres 110.4
1891 Female, age 85, both hemispheres 59.2
2620 Female, age 94, left hemisphere 26.3
1867 Male, age 76, both hemispheres 23.0
2861 Female, age 67, both hemispheres 20.2
2137 Male, age 80, left hemisphere 19.1
Parahippocampal cortex
nTPM: 32.3
2692 Male, age 74, both hemispheres 50.7
1990 Female, age 91, right hemisphere 42.7
2532 Female, age 72, left hemisphere 42.4
1850 Male, age 80, both hemispheres 32.7
2245 Female, age 91, both hemispheres 31.4
1933 Female, age 85, both hemispheres 30.5
2693 Female, age 94, both hemispheres 30.3
2018 Male, age 76, both hemispheres 27.5
2250 Female, age 67, right hemisphere 22.5
2622 Female, age 67, right hemisphere 12.2
Perirhinal gyrus
nTPM: 21.7
2521 Female, age 94, right hemisphere 28.4
1794 Male, age 80, right hemisphere 21.2
1847 Female, age 91, left hemisphere 21.0
2848 Male, age 76, right hemisphere 19.3
1841 Female, age 85, right hemisphere 18.7
Subiculum
nTPM: 58.3
2042 Male, age 76, both hemispheres 83.2
1901 Male, age 80, both hemispheres 68.3
2438 Female, age 94, left hemisphere 59.7
1977 Female, age 85, both hemispheres 55.5
2729 Female, age 91, right hemisphere 42.5
2619 Male, age 74, both hemispheres 41.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 51.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 51.1
Samples: 197

Max nTPM: 172.4
Min nTPM: 7.8
Std nTPM: 27.4
Median nTPM: 44.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 172.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 134.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 130.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 119.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 112.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 107.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 105.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 104.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 103.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 101.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 99.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.0
FF:10169-103B7 60 years, female 39.4
FF:10153-102I9 76 years, female 30.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 20.6
Pig sample Sample description nTPM
Subiculum
nTPM: 11.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 9.8
Sample A Female 9.8
Sample B Female 13.4
Sample C Male 11.5
Sample D Male 11.4
Dorsal hippocampus
nTPM: 20.6
Samples: 4

Max nTPM: 28.8
Min nTPM: 13.2
Sample A Female 28.8
Sample B Female 15.8
Sample C Male 24.5
Sample D Male 13.2
Entorhinal cortex
nTPM: 10.5
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.9
Sample A Female 9.1
Sample B Female 12.1
Sample C Male 8.9
Sample D Male 12.0
Ventral hippocampus
nTPM: 15.8
Samples: 4

Max nTPM: 19.0
Min nTPM: 12.8
Sample A Female 18.2
Sample B Female 12.8
Sample C Male 13.2
Sample D Male 19.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 19.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.5
Samples: 4

Max nTPM: 13.0
Min nTPM: 8.3
Sample A Male 13.0
Sample B Male 9.1
Sample C Female 11.4
Sample D Female 8.3
Hippocampal formation
nTPM: 19.9
Samples: 4

Max nTPM: 25.5
Min nTPM: 13.9
Sample A Male 13.9
Sample B Male 16.9
Sample C Female 23.4
Sample D Female 25.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.7
576427 Antisense, RP_040826_01_H01, Mouse strain C57BL/6J (56 days, male) 12.7

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