HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:40.6 nTPM
HPA Brain:96.1 nTPM
GTEx:40.6 nTPM
FANTOM5:59.3 Scaled Tags Per Million
Pig:153.7 nTPM
Mouse:369.5 nTPM
Allen mouse:18.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040361Antibody CAB026192
Glial cells MediumLow
Neuronal cells HighLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 96.1
Sample id Sample description nTPM
Hippocampus
nTPM: 67.4
2148 Female, age 91, left hemisphere 82.5
1898 Male, age 80, left hemisphere 81.7
2621 Female, age 67, right hemisphere 72.2
1911 Female, age 85, right hemisphere 64.2
1855 Male, age 76, left hemisphere 57.6
2529 Female, age 94, left hemisphere 46.3
Dentate gyrus
nTPM: 74.3
1927 Female, age 91, both hemispheres 99.5
2531 Female, age 67, both hemispheres 87.1
2528 Male, age 74, both hemispheres 74.8
2530 Female, age 94, left hemisphere 69.1
2246 Female, age 85, both hemispheres 63.4
2010 Male, age 76, both hemispheres 52.0
Entorhinal gyrus
nTPM: 84.2
2613 Female, age 94, left hemisphere 143.2
2764 Male, age 80, right hemisphere 85.8
1938 Female, age 85, left hemisphere 83.1
2686 Male, age 75, right hemisphere 78.1
1787 Male, age 76, left hemisphere 67.0
2117 Female, age 91, right hemisphere 48.0
Hippocampus, CA1
nTPM: 80.7
2749 Male, age 80, left hemisphere 140.3
2527 Male, age 74, both hemispheres 75.0
2045 Male, age 76, both hemispheres 64.1
1873 Female, age 85, both hemispheres 63.3
2082 Female, age 91, right hemisphere 61.0
Hippocampus, CA2
nTPM: 63.3
1892 Male, age 76, both hemispheres 72.1
1963 Male, age 80, left hemisphere 68.3
2437 Female, age 94, left hemisphere 62.0
2249 Male, age 74, both hemispheres 60.6
2113 Female, age 91, right hemisphere 58.6
1940 Female, age 85, left hemisphere 58.5
Hippocampus, CA3
nTPM: 96.1
2620 Female, age 94, left hemisphere 140.9
2137 Male, age 80, left hemisphere 138.3
2861 Female, age 67, both hemispheres 103.1
1867 Male, age 76, both hemispheres 75.9
2436 Male, age 74, both hemispheres 68.1
1891 Female, age 85, both hemispheres 50.3
Parahippocampal cortex
nTPM: 73.7
1850 Male, age 80, both hemispheres 83.1
2245 Female, age 91, both hemispheres 82.9
2622 Female, age 67, right hemisphere 82.3
1990 Female, age 91, right hemisphere 79.8
2693 Female, age 94, both hemispheres 77.7
2692 Male, age 74, both hemispheres 75.2
1933 Female, age 85, both hemispheres 69.9
2250 Female, age 67, right hemisphere 65.0
2532 Female, age 72, left hemisphere 63.3
2018 Male, age 76, both hemispheres 57.9
Perirhinal gyrus
nTPM: 79.6
1847 Female, age 91, left hemisphere 105.0
1794 Male, age 80, right hemisphere 87.8
2521 Female, age 94, right hemisphere 78.5
1841 Female, age 85, right hemisphere 68.7
2848 Male, age 76, right hemisphere 57.9
Subiculum
nTPM: 65.0
1901 Male, age 80, both hemispheres 83.9
2619 Male, age 74, both hemispheres 66.1
1977 Female, age 85, both hemispheres 65.6
2042 Male, age 76, both hemispheres 64.4
2729 Female, age 91, right hemisphere 55.8
2438 Female, age 94, left hemisphere 54.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 40.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.6
Samples: 197

Max nTPM: 104.4
Min nTPM: 7.1
Std nTPM: 21.3
Median nTPM: 37.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 104.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 98.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 96.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 90.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 86.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 84.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 80.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 80.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 79.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 79.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 79.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 59.3
FF:10169-103B7 60 years, female 75.8
FF:10153-102I9 76 years, female 42.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 153.7
Pig sample Sample description nTPM
Subiculum
nTPM: 125.8
Samples: 4

Max nTPM: 157.3
Min nTPM: 110.7
Sample A Female 157.3
Sample B Female 115.4
Sample C Male 119.7
Sample D Male 110.7
Dorsal hippocampus
nTPM: 108.9
Samples: 4

Max nTPM: 117.0
Min nTPM: 98.1
Sample A Female 117.0
Sample B Female 109.7
Sample C Male 110.9
Sample D Male 98.1
Entorhinal cortex
nTPM: 153.7
Samples: 4

Max nTPM: 164.8
Min nTPM: 141.3
Sample A Female 164.8
Sample B Female 141.3
Sample C Male 154.8
Sample D Male 153.8
Ventral hippocampus
nTPM: 110.8
Samples: 4

Max nTPM: 150.1
Min nTPM: 82.6
Sample A Female 84.0
Sample B Female 82.6
Sample C Male 150.1
Sample D Male 126.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 369.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 369.5
Samples: 4

Max nTPM: 430.5
Min nTPM: 310.8
Sample A Male 355.6
Sample B Male 381.2
Sample C Female 310.8
Sample D Female 430.5
Hippocampal formation
nTPM: 322.9
Samples: 4

Max nTPM: 370.1
Min nTPM: 271.2
Sample A Male 271.2
Sample B Male 334.5
Sample C Female 370.1
Sample D Female 315.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 18.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.5
2135 Antisense, RP_040407_02_G05, Mouse strain C57BL/6J (56 days, male) 18.5
2136 Antisense, RP_040407_02_G05, Mouse strain C57BL/6J (56 days, male) 14.0

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