MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.4 nTPM
HPA Brain:37.6 nTPM
GTEx:7.4 nTPM
FANTOM5:14.5 Scaled Tags Per Million
Pig:30.4 nTPM
Mouse:25.0 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.6
2219 Male, age 76, both hemispheres 60.1
2019 Male, age 18, unknown 52.1
1827 Male, age 72, unknown 41.1
2828 Female, age 72, unknown 25.6
2586 Male, age 75, left hemisphere 25.3
2666 Male, age 74, left hemisphere 14.5
1870 Female, age 42, unknown 11.2
2411 Female, age 72, unknown 9.9
1830 Male, age 51, unknown 8.1
1833 Male, age 53, unknown 7.9
Dorsal raphe nucleus
nTPM: 8.0
2750 Male, age 76, both hemispheres 10.2
2298 Female, age 72, unknown 9.9
1828 Male, age 53, unknown 8.9
2016 Female, age 72, unknown 6.0
2047 Male, age 72, unknown 5.1
Inferior colliculus
nTPM: 12.0
2097 Female, age 72, unknown 14.5
1848 Female, age 42, unknown 14.2
1890 Male, age 53, unknown 12.2
2849 Male, age 72, unknown 7.3
Median raphe nucleus
nTPM: 10.3
2220 Male, age 76, midline 10.3
Periaquaductal grey, anterior
nTPM: 23.6
1795 Male, age 51, unknown 32.5
1947 Male, age 18, unknown 25.9
2502 Female, age 75, unknown 12.3
Periaquaductal grey, dorsal
nTPM: 13.4
1831 Male, age 72, unknown 28.3
2464 Female, age 72, unknown 11.2
1840 Male, age 53, unknown 7.2
2850 Male, age 76, both hemispheres 6.8
Periaquaductal grey, lateral
nTPM: 8.8
2272 Male, age 74, both hemispheres 10.9
2053 Male, age 18, unknown 8.6
2140 Male, age 76, both hemispheres 6.9
Pretectal area
nTPM: 37.6
1817 Female, age 42, unknown 98.6
2007 Male, age 72, unknown 82.7
1816 Male, age 51, unknown 70.4
1815 Male, age 53, unknown 58.6
1944 Female, age 72, unknown 31.3
2667 Female, age 75, unknown 21.1
2273 Male, age 74, both hemispheres 11.5
2224 Female, age 72, unknown 11.2
2407 Male, age 75, both hemispheres 10.4
2316 Male, age 76, right hemisphere 10.0
2825 Male, age 18, unknown 7.9
Red nucleus
nTPM: 14.5
2785 Male, age 18, unknown 37.0
2503 Female, age 72, unknown 17.7
2725 Female, age 75, unknown 17.2
2588 Male, age 74, left hemisphere 16.9
2584 Male, age 75, left hemisphere 14.8
1865 Male, age 51, unknown 14.4
2823 Male, age 76, right hemisphere 11.8
1821 Female, age 72, unknown 11.4
1954 Female, age 42, unknown 9.9
1904 Male, age 53, unknown 9.1
2227 Male, age 72, unknown 7.4
2769 Male, age 72, unknown 6.8
Substantia nigra
nTPM: 16.1
1889 Female, age 72, unknown 41.7
2665 Male, age 74, both hemispheres 24.8
2583 Male, age 75, right hemisphere 20.8
2409 Female, age 72, unknown 15.8
1941 Male, age 53, unknown 14.9
2590 Female, age 75, unknown 14.2
1851 Male, age 51, unknown 11.4
1916 Female, age 42, unknown 7.9
2241 Male, age 72, unknown 6.1
2699 Male, age 18, unknown 4.0
Superior colliculus
nTPM: 18.4
1796 Male, age 53, unknown 36.2
2668 Female, age 75, unknown 26.2
2087 Female, age 72, unknown 24.6
2261 Male, age 18, unknown 18.1
1913 Female, age 42, unknown 17.5
1995 Male, age 72, unknown 14.9
1895 Male, age 76, right hemisphere 14.0
1839 Male, age 51, unknown 12.1
2587 Male, age 74, left hemisphere 11.9
2664 Male, age 75, both hemispheres 8.2
Ventral tegmental area
nTPM: 9.5
2410 Female, age 72, unknown 15.8
2218 Male, age 76, both hemispheres 11.7
2223 Female, age 72, unknown 8.0
1942 Male, age 51, unknown 7.6
2021 Male, age 53, unknown 7.2
1915 Female, age 42, unknown 6.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.4
Samples: 139

Max nTPM: 14.6
Min nTPM: 2.0
Std nTPM: 2.5
Median nTPM: 7.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 14.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 13.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 12.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 12.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 11.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 11.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 11.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 11.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 11.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 11.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.5
FF:10158-103A5 76 years, female 14.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.3
Samples: 4

Max nTPM: 30.7
Min nTPM: 18.8
Sample A Female 18.8
Sample B Female 23.3
Sample C Male 20.5
Sample D Male 30.7
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 41.1
Min nTPM: 25.7
Sample A Female 27.0
Sample B Female 25.7
Sample C Male 41.1
Sample D Male 27.7
Periaqueductal gray
nTPM: 20.6
Samples: 3

Max nTPM: 26.7
Min nTPM: 17.5
Sample B Female 26.7
Sample C Male 17.5
Sample D Male 17.7
Superior colliculi
nTPM: 29.2
Samples: 4

Max nTPM: 34.8
Min nTPM: 21.6
Sample A Female 29.2
Sample B Female 21.6
Sample C Male 34.8
Sample D Male 31.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 26.3
Min nTPM: 23.5
Sample A Male 23.5
Sample B Male 26.3
Sample C Female 26.0
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
69201600 Antisense, RP_050317_03_C03, Mouse strain C57BL/6J (56 days, male) 2.7
70919573 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 0.4
72119595 Antisense, RP_051017_04_A09, Mouse strain C57BL/6J (56 days, male) 0.4
73512203 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 0.4

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