MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.7 nTPM
HPA Brain:41.2 nTPM
GTEx:45.7 nTPM
FANTOM5:79.9 Scaled Tags Per Million
Pig:71.1 nTPM
Mouse:36.6 nTPM
Allen mouse:24.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.1
1870 Female, age 42, unknown 41.8
2666 Male, age 74, left hemisphere 41.3
2586 Male, age 75, left hemisphere 38.3
2219 Male, age 76, both hemispheres 37.6
1827 Male, age 72, unknown 37.0
1833 Male, age 53, unknown 36.9
2828 Female, age 72, unknown 35.9
1830 Male, age 51, unknown 35.7
2411 Female, age 72, unknown 33.8
2019 Male, age 18, unknown 32.6
Dorsal raphe nucleus
nTPM: 31.6
2750 Male, age 76, both hemispheres 36.7
1828 Male, age 53, unknown 31.7
2016 Female, age 72, unknown 31.5
2298 Female, age 72, unknown 29.3
2047 Male, age 72, unknown 28.5
Inferior colliculus
nTPM: 32.0
2849 Male, age 72, unknown 39.1
1848 Female, age 42, unknown 32.2
1890 Male, age 53, unknown 30.1
2097 Female, age 72, unknown 26.5
Median raphe nucleus
nTPM: 41.2
2220 Male, age 76, midline 41.2
Periaquaductal grey, anterior
nTPM: 33.1
1947 Male, age 18, unknown 34.9
1795 Male, age 51, unknown 33.3
2502 Female, age 75, unknown 31.0
Periaquaductal grey, dorsal
nTPM: 31.8
2850 Male, age 76, both hemispheres 36.0
2464 Female, age 72, unknown 34.3
1831 Male, age 72, unknown 30.8
1840 Male, age 53, unknown 26.2
Periaquaductal grey, lateral
nTPM: 32.5
2272 Male, age 74, both hemispheres 33.5
2140 Male, age 76, both hemispheres 33.2
2053 Male, age 18, unknown 30.8
Pretectal area
nTPM: 34.7
1815 Male, age 53, unknown 40.4
1817 Female, age 42, unknown 38.9
2007 Male, age 72, unknown 36.2
1816 Male, age 51, unknown 36.1
2407 Male, age 75, both hemispheres 35.7
2825 Male, age 18, unknown 35.0
2273 Male, age 74, both hemispheres 33.7
2667 Female, age 75, unknown 33.5
1944 Female, age 72, unknown 32.4
2316 Male, age 76, right hemisphere 30.2
2224 Female, age 72, unknown 29.1
Red nucleus
nTPM: 41.0
2823 Male, age 76, right hemisphere 45.3
2725 Female, age 75, unknown 44.9
1865 Male, age 51, unknown 43.6
1954 Female, age 42, unknown 41.9
2588 Male, age 74, left hemisphere 41.9
1904 Male, age 53, unknown 41.4
2503 Female, age 72, unknown 41.0
1821 Female, age 72, unknown 39.4
2769 Male, age 72, unknown 38.7
2785 Male, age 18, unknown 38.1
2227 Male, age 72, unknown 37.8
2584 Male, age 75, left hemisphere 37.7
Substantia nigra
nTPM: 32.1
2699 Male, age 18, unknown 39.1
1851 Male, age 51, unknown 34.3
1941 Male, age 53, unknown 33.3
1916 Female, age 42, unknown 33.2
2590 Female, age 75, unknown 33.2
2241 Male, age 72, unknown 31.6
1889 Female, age 72, unknown 31.1
2665 Male, age 74, both hemispheres 29.9
2583 Male, age 75, right hemisphere 29.2
2409 Female, age 72, unknown 25.8
Superior colliculus
nTPM: 34.1
2587 Male, age 74, left hemisphere 40.2
1913 Female, age 42, unknown 39.0
1895 Male, age 76, right hemisphere 35.6
1796 Male, age 53, unknown 34.2
1995 Male, age 72, unknown 34.2
2261 Male, age 18, unknown 33.2
2668 Female, age 75, unknown 32.7
1839 Male, age 51, unknown 31.8
2664 Male, age 75, both hemispheres 30.8
2087 Female, age 72, unknown 29.3
Ventral tegmental area
nTPM: 33.5
2223 Female, age 72, unknown 37.5
2218 Male, age 76, both hemispheres 36.7
2021 Male, age 53, unknown 33.8
1915 Female, age 42, unknown 32.8
1942 Male, age 51, unknown 30.4
2410 Female, age 72, unknown 29.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.7
Samples: 139

Max nTPM: 88.5
Min nTPM: 28.7
Std nTPM: 9.6
Median nTPM: 43.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 88.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 78.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 74.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 68.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 68.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 67.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 64.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 64.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 62.9
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 62.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 62.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.9
FF:10158-103A5 76 years, female 79.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.2
Samples: 4

Max nTPM: 81.7
Min nTPM: 54.0
Sample A Female 69.0
Sample B Female 54.0
Sample C Male 68.1
Sample D Male 81.7
Midbrain
nTPM: 71.1
Samples: 4

Max nTPM: 104.3
Min nTPM: 57.4
Sample A Female 104.3
Sample B Female 62.1
Sample C Male 60.5
Sample D Male 57.4
Periaqueductal gray
nTPM: 65.2
Samples: 3

Max nTPM: 71.8
Min nTPM: 60.0
Sample B Female 60.0
Sample C Male 71.8
Sample D Male 63.7
Superior colliculi
nTPM: 65.8
Samples: 4

Max nTPM: 72.3
Min nTPM: 54.1
Sample A Female 70.0
Sample B Female 54.1
Sample C Male 66.7
Sample D Male 72.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.6
Samples: 4

Max nTPM: 37.2
Min nTPM: 36.1
Sample A Male 37.2
Sample B Male 36.5
Sample C Female 36.1
Sample D Female 36.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.1
248542 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 24.1
293469 Antisense, RP_040604_02_G06, Mouse strain C57BL/6J (56 days, male) 23.4

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