MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:58.9 nTPM
GTEx:24.3 nTPM
FANTOM5:71.6 Scaled Tags Per Million
Pig:66.7 nTPM
Mouse:138.6 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.4
2019 Male, age 18, unknown 55.9
2411 Female, age 72, unknown 52.9
1870 Female, age 42, unknown 51.6
2666 Male, age 74, left hemisphere 49.0
1827 Male, age 72, unknown 46.4
2219 Male, age 76, both hemispheres 45.0
1833 Male, age 53, unknown 43.5
1830 Male, age 51, unknown 41.7
2828 Female, age 72, unknown 40.8
2586 Male, age 75, left hemisphere 36.8
Dorsal raphe nucleus
nTPM: 50.1
2298 Female, age 72, unknown 53.9
2750 Male, age 76, both hemispheres 51.2
2047 Male, age 72, unknown 50.9
1828 Male, age 53, unknown 50.4
2016 Female, age 72, unknown 44.2
Inferior colliculus
nTPM: 49.9
2097 Female, age 72, unknown 53.7
2849 Male, age 72, unknown 49.9
1848 Female, age 42, unknown 48.0
1890 Male, age 53, unknown 47.8
Median raphe nucleus
nTPM: 55.3
2220 Male, age 76, midline 55.3
Periaquaductal grey, anterior
nTPM: 44.8
1947 Male, age 18, unknown 47.4
1795 Male, age 51, unknown 44.2
2502 Female, age 75, unknown 42.7
Periaquaductal grey, dorsal
nTPM: 51.2
1840 Male, age 53, unknown 61.6
2850 Male, age 76, both hemispheres 50.1
1831 Male, age 72, unknown 49.1
2464 Female, age 72, unknown 43.9
Periaquaductal grey, lateral
nTPM: 46.3
2140 Male, age 76, both hemispheres 46.8
2053 Male, age 18, unknown 46.1
2272 Male, age 74, both hemispheres 46.1
Pretectal area
nTPM: 56.6
1817 Female, age 42, unknown 75.1
2007 Male, age 72, unknown 67.3
1815 Male, age 53, unknown 61.1
1816 Male, age 51, unknown 61.0
1944 Female, age 72, unknown 59.8
2667 Female, age 75, unknown 59.5
2273 Male, age 74, both hemispheres 56.7
2224 Female, age 72, unknown 47.6
2825 Male, age 18, unknown 46.1
2407 Male, age 75, both hemispheres 44.9
2316 Male, age 76, right hemisphere 44.1
Red nucleus
nTPM: 49.9
1821 Female, age 72, unknown 66.0
2725 Female, age 75, unknown 55.8
2503 Female, age 72, unknown 55.5
1954 Female, age 42, unknown 52.2
1865 Male, age 51, unknown 52.0
1904 Male, age 53, unknown 50.6
2785 Male, age 18, unknown 48.4
2588 Male, age 74, left hemisphere 47.3
2823 Male, age 76, right hemisphere 45.5
2769 Male, age 72, unknown 45.3
2227 Male, age 72, unknown 41.9
2584 Male, age 75, left hemisphere 38.7
Substantia nigra
nTPM: 58.9
2241 Male, age 72, unknown 73.1
2409 Female, age 72, unknown 68.3
1889 Female, age 72, unknown 63.5
1916 Female, age 42, unknown 62.9
1851 Male, age 51, unknown 58.3
2665 Male, age 74, both hemispheres 55.7
1941 Male, age 53, unknown 52.3
2590 Female, age 75, unknown 52.1
2699 Male, age 18, unknown 51.5
2583 Male, age 75, right hemisphere 51.2
Superior colliculus
nTPM: 47.4
2587 Male, age 74, left hemisphere 54.5
2261 Male, age 18, unknown 51.8
1895 Male, age 76, right hemisphere 50.6
1796 Male, age 53, unknown 49.0
2087 Female, age 72, unknown 48.0
1839 Male, age 51, unknown 47.7
2668 Female, age 75, unknown 46.1
1913 Female, age 42, unknown 45.8
1995 Male, age 72, unknown 40.4
2664 Male, age 75, both hemispheres 39.9
Ventral tegmental area
nTPM: 56.8
2218 Male, age 76, both hemispheres 63.5
2410 Female, age 72, unknown 58.6
1915 Female, age 42, unknown 57.7
2223 Female, age 72, unknown 57.3
1942 Male, age 51, unknown 54.6
2021 Male, age 53, unknown 49.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.3
Samples: 139

Max nTPM: 39.2
Min nTPM: 14.2
Std nTPM: 4.3
Median nTPM: 24.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 39.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 33.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 32.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 32.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 32.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 31.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 31.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 31.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 30.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 30.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.6
FF:10158-103A5 76 years, female 71.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.8
Samples: 4

Max nTPM: 73.9
Min nTPM: 45.8
Sample A Female 72.9
Sample B Female 58.5
Sample C Male 73.9
Sample D Male 45.8
Midbrain
nTPM: 64.6
Samples: 4

Max nTPM: 80.8
Min nTPM: 57.0
Sample A Female 62.7
Sample B Female 57.0
Sample C Male 80.8
Sample D Male 57.8
Periaqueductal gray
nTPM: 53.4
Samples: 3

Max nTPM: 62.3
Min nTPM: 44.4
Sample B Female 53.4
Sample C Male 62.3
Sample D Male 44.4
Superior colliculi
nTPM: 66.7
Samples: 4

Max nTPM: 81.1
Min nTPM: 58.2
Sample A Female 66.5
Sample B Female 60.8
Sample C Male 81.1
Sample D Male 58.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 138.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 138.7
Samples: 4

Max nTPM: 144.6
Min nTPM: 129.4
Sample A Male 129.4
Sample B Male 142.4
Sample C Female 144.6
Sample D Female 138.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
70194946 Antisense, RP_050517_02_A11, Mouse strain C57BL/6J (56 days, male) 5.4

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