MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA Brain:27.1 nTPM
GTEx:11.0 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Pig:9.0 nTPM
Mouse:41.8 nTPM
Allen mouse:13.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.1
1833 Male, age 53, unknown 18.0
2586 Male, age 75, left hemisphere 17.9
2219 Male, age 76, both hemispheres 17.6
1830 Male, age 51, unknown 17.3
2019 Male, age 18, unknown 15.6
2411 Female, age 72, unknown 15.4
1870 Female, age 42, unknown 14.6
1827 Male, age 72, unknown 14.5
2666 Male, age 74, left hemisphere 11.5
2828 Female, age 72, unknown 9.1
Dorsal raphe nucleus
nTPM: 15.7
2298 Female, age 72, unknown 18.8
2016 Female, age 72, unknown 17.5
1828 Male, age 53, unknown 15.7
2047 Male, age 72, unknown 15.2
2750 Male, age 76, both hemispheres 11.1
Inferior colliculus
nTPM: 27.1
2849 Male, age 72, unknown 34.8
1848 Female, age 42, unknown 30.0
2097 Female, age 72, unknown 23.0
1890 Male, age 53, unknown 20.8
Median raphe nucleus
nTPM: 12.3
2220 Male, age 76, midline 12.3
Periaquaductal grey, anterior
nTPM: 22.7
2502 Female, age 75, unknown 43.9
1795 Male, age 51, unknown 12.5
1947 Male, age 18, unknown 11.8
Periaquaductal grey, dorsal
nTPM: 21.1
1840 Male, age 53, unknown 29.4
2464 Female, age 72, unknown 25.2
2850 Male, age 76, both hemispheres 18.0
1831 Male, age 72, unknown 11.7
Periaquaductal grey, lateral
nTPM: 18.0
2140 Male, age 76, both hemispheres 22.0
2272 Male, age 74, both hemispheres 18.0
2053 Male, age 18, unknown 13.9
Pretectal area
nTPM: 14.9
2316 Male, age 76, right hemisphere 24.1
2825 Male, age 18, unknown 23.3
2224 Female, age 72, unknown 19.6
2007 Male, age 72, unknown 15.6
2407 Male, age 75, both hemispheres 15.0
1816 Male, age 51, unknown 12.5
1944 Female, age 72, unknown 12.2
1817 Female, age 42, unknown 11.5
2273 Male, age 74, both hemispheres 11.4
2667 Female, age 75, unknown 10.2
1815 Male, age 53, unknown 8.0
Red nucleus
nTPM: 11.1
2227 Male, age 72, unknown 16.6
2769 Male, age 72, unknown 16.5
2785 Male, age 18, unknown 15.9
2584 Male, age 75, left hemisphere 15.5
2823 Male, age 76, right hemisphere 10.4
2503 Female, age 72, unknown 10.0
1821 Female, age 72, unknown 9.9
2588 Male, age 74, left hemisphere 9.3
1954 Female, age 42, unknown 8.8
1865 Male, age 51, unknown 8.0
1904 Male, age 53, unknown 7.2
2725 Female, age 75, unknown 5.4
Substantia nigra
nTPM: 13.8
1941 Male, age 53, unknown 20.8
2590 Female, age 75, unknown 17.9
2665 Male, age 74, both hemispheres 17.3
1889 Female, age 72, unknown 13.4
1851 Male, age 51, unknown 13.2
2241 Male, age 72, unknown 12.9
1916 Female, age 42, unknown 12.7
2699 Male, age 18, unknown 11.9
2409 Female, age 72, unknown 9.1
2583 Male, age 75, right hemisphere 9.1
Superior colliculus
nTPM: 15.9
1895 Male, age 76, right hemisphere 28.5
1839 Male, age 51, unknown 22.8
2664 Male, age 75, both hemispheres 21.4
1796 Male, age 53, unknown 18.4
2587 Male, age 74, left hemisphere 17.2
2087 Female, age 72, unknown 12.7
2261 Male, age 18, unknown 12.7
2668 Female, age 75, unknown 11.7
1995 Male, age 72, unknown 7.4
1913 Female, age 42, unknown 6.3
Ventral tegmental area
nTPM: 15.5
1942 Male, age 51, unknown 18.5
1915 Female, age 42, unknown 16.8
2218 Male, age 76, both hemispheres 16.6
2223 Female, age 72, unknown 16.4
2021 Male, age 53, unknown 13.6
2410 Female, age 72, unknown 11.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.0
Samples: 139

Max nTPM: 41.0
Min nTPM: 1.6
Std nTPM: 6.3
Median nTPM: 10.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 41.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 24.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 24.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 24.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 24.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 23.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 22.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 22.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 21.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 21.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.3
FF:10158-103A5 76 years, female 1.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.0
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.0
Sample A Female 6.2
Sample B Female 4.8
Sample C Male 5.8
Sample D Male 3.0
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 11.8
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 8.3
Sample C Male 3.7
Sample D Male 11.8
Periaqueductal gray
nTPM: 9.0
Samples: 3

Max nTPM: 10.5
Min nTPM: 8.2
Sample B Female 8.2
Sample C Male 10.5
Sample D Male 8.2
Superior colliculi
nTPM: 8.2
Samples: 4

Max nTPM: 12.0
Min nTPM: 4.1
Sample A Female 9.1
Sample B Female 12.0
Sample C Male 4.1
Sample D Male 7.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.8
Samples: 4

Max nTPM: 50.7
Min nTPM: 34.9
Sample A Male 50.7
Sample B Male 40.6
Sample C Female 34.9
Sample D Female 41.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.7
76135823 Antisense, RP_060711_04_D03, Mouse strain C57BL/6J (56 days, male) 13.8
69752089 Antisense, RP_050505_01_B03, Mouse strain C57BL/6J (56 days, male) 13.7

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