MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1308.8 nTPM
HPA Brain:495.8 nTPM
GTEx:1308.8 nTPM
FANTOM5:412.6 Scaled Tags Per Million
Pig:828.6 nTPM
Mouse:21.9 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 495.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 408.5
2666 Male, age 74, left hemisphere 467.4
2828 Female, age 72, unknown 454.2
1870 Female, age 42, unknown 449.6
2411 Female, age 72, unknown 430.8
2586 Male, age 75, left hemisphere 427.6
1833 Male, age 53, unknown 402.6
1830 Male, age 51, unknown 399.6
2019 Male, age 18, unknown 376.3
1827 Male, age 72, unknown 366.1
2219 Male, age 76, both hemispheres 310.7
Dorsal raphe nucleus
nTPM: 423.4
2016 Female, age 72, unknown 466.5
2298 Female, age 72, unknown 443.9
2750 Male, age 76, both hemispheres 416.8
1828 Male, age 53, unknown 406.8
2047 Male, age 72, unknown 383.1
Inferior colliculus
nTPM: 366.6
1890 Male, age 53, unknown 415.2
2097 Female, age 72, unknown 362.7
1848 Female, age 42, unknown 355.3
2849 Male, age 72, unknown 333.0
Median raphe nucleus
nTPM: 381.3
2220 Male, age 76, midline 381.3
Periaquaductal grey, anterior
nTPM: 398.8
2502 Female, age 75, unknown 447.3
1795 Male, age 51, unknown 389.0
1947 Male, age 18, unknown 360.1
Periaquaductal grey, dorsal
nTPM: 396.8
1840 Male, age 53, unknown 428.8
1831 Male, age 72, unknown 412.0
2464 Female, age 72, unknown 373.6
2850 Male, age 76, both hemispheres 373.0
Periaquaductal grey, lateral
nTPM: 380.0
2053 Male, age 18, unknown 414.8
2140 Male, age 76, both hemispheres 377.9
2272 Male, age 74, both hemispheres 347.3
Pretectal area
nTPM: 368.8
2316 Male, age 76, right hemisphere 418.9
1815 Male, age 53, unknown 395.3
1817 Female, age 42, unknown 393.6
2273 Male, age 74, both hemispheres 384.0
2825 Male, age 18, unknown 380.1
2224 Female, age 72, unknown 379.6
2007 Male, age 72, unknown 368.9
2407 Male, age 75, both hemispheres 364.1
1816 Male, age 51, unknown 339.7
1944 Female, age 72, unknown 325.5
2667 Female, age 75, unknown 307.0
Red nucleus
nTPM: 444.3
2503 Female, age 72, unknown 561.1
1865 Male, age 51, unknown 486.3
2769 Male, age 72, unknown 470.5
1821 Female, age 72, unknown 468.2
2227 Male, age 72, unknown 453.2
1904 Male, age 53, unknown 449.2
2588 Male, age 74, left hemisphere 447.7
2725 Female, age 75, unknown 441.1
2584 Male, age 75, left hemisphere 413.8
2785 Male, age 18, unknown 403.7
1954 Female, age 42, unknown 381.8
2823 Male, age 76, right hemisphere 354.8
Substantia nigra
nTPM: 495.8
2699 Male, age 18, unknown 618.8
1851 Male, age 51, unknown 606.5
2409 Female, age 72, unknown 554.6
2665 Male, age 74, both hemispheres 527.9
1916 Female, age 42, unknown 517.3
2241 Male, age 72, unknown 498.0
2590 Female, age 75, unknown 471.4
1889 Female, age 72, unknown 403.1
2583 Male, age 75, right hemisphere 390.4
1941 Male, age 53, unknown 370.2
Superior colliculus
nTPM: 413.7
2587 Male, age 74, left hemisphere 521.0
1913 Female, age 42, unknown 473.5
1995 Male, age 72, unknown 471.5
2668 Female, age 75, unknown 451.4
1796 Male, age 53, unknown 422.2
2261 Male, age 18, unknown 371.6
1839 Male, age 51, unknown 368.9
2664 Male, age 75, both hemispheres 363.8
1895 Male, age 76, right hemisphere 350.0
2087 Female, age 72, unknown 342.6
Ventral tegmental area
nTPM: 468.8
1915 Female, age 42, unknown 549.8
2410 Female, age 72, unknown 495.9
2223 Female, age 72, unknown 483.2
2021 Male, age 53, unknown 463.7
1942 Male, age 51, unknown 424.4
2218 Male, age 76, both hemispheres 395.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1308.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1308.8
Samples: 139

Max nTPM: 4829.2
Min nTPM: 393.6
Std nTPM: 578.4
Median nTPM: 1183.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4829.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3489.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3293.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2457.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2426.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2354.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2294.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2260.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2165.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2116.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2048.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 412.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 412.6
FF:10158-103A5 76 years, female 412.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 828.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 805.1
Samples: 4

Max nTPM: 990.5
Min nTPM: 588.3
Sample A Female 990.5
Sample B Female 841.9
Sample C Male 588.3
Sample D Male 799.6
Midbrain
nTPM: 778.1
Samples: 4

Max nTPM: 1402.0
Min nTPM: 426.5
Sample A Female 1402.0
Sample B Female 834.6
Sample C Male 449.4
Sample D Male 426.5
Periaqueductal gray
nTPM: 622.8
Samples: 3

Max nTPM: 633.7
Min nTPM: 613.9
Sample B Female 613.9
Sample C Male 633.7
Sample D Male 620.9
Superior colliculi
nTPM: 828.6
Samples: 4

Max nTPM: 1020.4
Min nTPM: 641.3
Sample A Female 1020.4
Sample B Female 924.5
Sample C Male 641.3
Sample D Male 728.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 25.4
Min nTPM: 19.1
Sample A Male 25.4
Sample B Male 20.6
Sample C Female 19.1
Sample D Female 22.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
69873289 Antisense, RP_050510_04_H11, Mouse strain C57BL/6J (56 days, male) 6.4
70795718 Antisense, RP_050712_01_H01, Mouse strain C57BL/6J (56 days, male) 0.0

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