MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:164.2 nTPM
HPA Brain:229.1 nTPM
GTEx:164.2 nTPM
FANTOM5:439.0 Scaled Tags Per Million
Pig:232.5 nTPM
Mouse:125.7 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 229.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 186.5
2019 Male, age 18, unknown 217.9
2586 Male, age 75, left hemisphere 202.1
2411 Female, age 72, unknown 195.7
2666 Male, age 74, left hemisphere 190.6
1870 Female, age 42, unknown 189.1
1827 Male, age 72, unknown 188.6
1833 Male, age 53, unknown 180.4
1830 Male, age 51, unknown 176.9
2828 Female, age 72, unknown 168.9
2219 Male, age 76, both hemispheres 155.1
Dorsal raphe nucleus
nTPM: 192.0
2298 Female, age 72, unknown 206.9
1828 Male, age 53, unknown 190.3
2750 Male, age 76, both hemispheres 188.5
2016 Female, age 72, unknown 187.2
2047 Male, age 72, unknown 187.2
Inferior colliculus
nTPM: 177.3
1890 Male, age 53, unknown 190.4
2097 Female, age 72, unknown 185.6
1848 Female, age 42, unknown 172.9
2849 Male, age 72, unknown 160.1
Median raphe nucleus
nTPM: 182.3
2220 Male, age 76, midline 182.3
Periaquaductal grey, anterior
nTPM: 196.4
2502 Female, age 75, unknown 231.0
1947 Male, age 18, unknown 190.9
1795 Male, age 51, unknown 167.4
Periaquaductal grey, dorsal
nTPM: 170.7
1831 Male, age 72, unknown 180.7
1840 Male, age 53, unknown 175.2
2464 Female, age 72, unknown 170.0
2850 Male, age 76, both hemispheres 156.9
Periaquaductal grey, lateral
nTPM: 164.4
2272 Male, age 74, both hemispheres 173.9
2053 Male, age 18, unknown 171.8
2140 Male, age 76, both hemispheres 147.4
Pretectal area
nTPM: 187.5
1817 Female, age 42, unknown 220.6
1815 Male, age 53, unknown 214.2
2007 Male, age 72, unknown 213.9
1816 Male, age 51, unknown 212.7
1944 Female, age 72, unknown 206.4
2224 Female, age 72, unknown 184.9
2273 Male, age 74, both hemispheres 178.1
2407 Male, age 75, both hemispheres 170.6
2825 Male, age 18, unknown 160.6
2667 Female, age 75, unknown 160.4
2316 Male, age 76, right hemisphere 140.1
Red nucleus
nTPM: 198.4
1821 Female, age 72, unknown 242.0
1865 Male, age 51, unknown 211.8
2503 Female, age 72, unknown 207.6
2725 Female, age 75, unknown 207.3
2785 Male, age 18, unknown 200.6
2584 Male, age 75, left hemisphere 198.4
1904 Male, age 53, unknown 194.0
1954 Female, age 42, unknown 193.4
2588 Male, age 74, left hemisphere 188.2
2769 Male, age 72, unknown 181.4
2823 Male, age 76, right hemisphere 178.4
2227 Male, age 72, unknown 178.0
Substantia nigra
nTPM: 229.1
1916 Female, age 42, unknown 268.8
2409 Female, age 72, unknown 258.9
2241 Male, age 72, unknown 251.9
1851 Male, age 51, unknown 246.5
1941 Male, age 53, unknown 225.9
2699 Male, age 18, unknown 221.6
1889 Female, age 72, unknown 220.7
2590 Female, age 75, unknown 208.8
2665 Male, age 74, both hemispheres 208.1
2583 Male, age 75, right hemisphere 179.7
Superior colliculus
nTPM: 183.1
2587 Male, age 74, left hemisphere 216.3
2668 Female, age 75, unknown 185.3
2087 Female, age 72, unknown 184.8
1995 Male, age 72, unknown 182.5
2664 Male, age 75, both hemispheres 182.0
1913 Female, age 42, unknown 179.2
2261 Male, age 18, unknown 177.2
1839 Male, age 51, unknown 176.8
1895 Male, age 76, right hemisphere 174.5
1796 Male, age 53, unknown 172.4
Ventral tegmental area
nTPM: 197.0
2410 Female, age 72, unknown 223.0
1915 Female, age 42, unknown 212.3
2218 Male, age 76, both hemispheres 197.9
2223 Female, age 72, unknown 188.5
1942 Male, age 51, unknown 186.4
2021 Male, age 53, unknown 173.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 164.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 164.2
Samples: 139

Max nTPM: 269.1
Min nTPM: 109.9
Std nTPM: 32.2
Median nTPM: 158.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 269.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 264.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 256.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 252.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 235.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 232.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 230.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 226.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 225.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 223.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 220.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 439.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 439.0
FF:10158-103A5 76 years, female 439.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 232.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 210.1
Samples: 4

Max nTPM: 252.3
Min nTPM: 178.2
Sample A Female 252.3
Sample B Female 212.2
Sample C Male 197.6
Sample D Male 178.2
Midbrain
nTPM: 230.0
Samples: 4

Max nTPM: 278.0
Min nTPM: 194.9
Sample A Female 278.0
Sample B Female 226.1
Sample C Male 220.8
Sample D Male 194.9
Periaqueductal gray
nTPM: 180.1
Samples: 3

Max nTPM: 187.9
Min nTPM: 168.3
Sample B Female 187.9
Sample C Male 184.1
Sample D Male 168.3
Superior colliculi
nTPM: 232.6
Samples: 4

Max nTPM: 252.0
Min nTPM: 213.0
Sample A Female 247.4
Sample B Female 217.8
Sample C Male 252.0
Sample D Male 213.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 125.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.7
Samples: 4

Max nTPM: 134.0
Min nTPM: 121.1
Sample A Male 121.1
Sample B Male 123.5
Sample C Female 134.0
Sample D Female 124.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
72182999 Antisense, RP_050927_03_B03, Mouse strain C57BL/6J (56 days, male) 12.0

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