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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
87.1
nTPM
Monaco:
318.6
nTPM
Schmiedel:
116.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
87.1
HPA sample
nTPM
gdT-cell nTPM: 67.7
Samples: 6
Max nTPM: 91.8
Min nTPM: 55.6
P10809_1007
55.6
P10809_1022
91.8
P10809_1041
65.7
P10809_1060
60.8
P10809_1077
70.3
P10809_1098
62.0
MAIT T-cell nTPM: 70.3
Samples: 6
Max nTPM: 99.8
Min nTPM: 54.3
P10809_1006
69.7
P10809_1024
99.8
P10809_1043
66.0
P10809_1062
59.3
P10809_1083
54.3
P10809_1097
72.8
Memory CD4 T-cell nTPM: 61.9
Samples: 6
Max nTPM: 66.7
Min nTPM: 57.1
P10809_1014
61.6
P10809_1026
64.7
P10809_1045
63.0
P10809_1064
57.1
P10809_1086
66.7
P10809_1113
58.0
Memory CD8 T-cell nTPM: 62.7
Samples: 5
Max nTPM: 68.9
Min nTPM: 58.2
P10809_1012
64.1
P10809_1027
61.7
P10809_1046
60.6
P10809_1065
68.9
P10809_1111
58.2
Naive CD4 T-cell nTPM: 51.0
Samples: 6
Max nTPM: 57.4
Min nTPM: 39.9
P10809_1015
52.1
P10809_1030
39.9
P10809_1049
53.1
P10809_1068
57.4
P10809_1085
53.6
P10809_1112
49.7
Naive CD8 T-cell nTPM: 59.3
Samples: 6
Max nTPM: 71.6
Min nTPM: 47.7
P10809_1016
47.7
P10809_1031
62.2
P10809_1050
52.0
P10809_1069
71.6
P10809_1087
70.2
P10809_1110
51.9
T-reg nTPM: 87.2
Samples: 6
Max nTPM: 96.6
Min nTPM: 76.2
P10809_1018
96.6
P10809_1037
90.1
P10809_1056
77.7
P10809_1075
76.2
P10809_1094
95.6
P10809_1106
86.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
318.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 251.6
Samples: 4
Max nTPM: 299.3
Min nTPM: 233.9
RHH5202_R3573
299.3
RHH5230_R3602
236.0
RHH5259_R3631
233.9
RHH5288_R3660
237.2
Effector memory CD8 T-cell nTPM: 314.2
Samples: 4
Max nTPM: 437.6
Min nTPM: 261.0
RHH5203_R3574
437.6
RHH5231_R3603
271.8
RHH5260_R3632
261.0
RHH5289_R3661
286.5
MAIT T-cell nTPM: 314.1
Samples: 4
Max nTPM: 433.5
Min nTPM: 246.9
RHH5233_R3605
286.8
RHH5205_R3576
433.5
RHH5262_R3634
289.0
RHH5297_R3663
246.9
Memory CD4 T-cell TFH nTPM: 277.8
Samples: 4
Max nTPM: 386.7
Min nTPM: 220.3
RHH5300_R3666
237.6
RHH5236_R3608
220.3
RHH5265_R3637
266.7
RHH5208_R3579
386.7
Memory CD4 T-cell Th1 nTPM: 238.7
Samples: 4
Max nTPM: 276.4
Min nTPM: 216.0
RHH5210_R3581
276.4
RHH5302_R3668
232.2
RHH5238_R3610
216.0
RHH5267_R3639
230.2
Memory CD4 T-cell Th1/Th17 nTPM: 291.7
Samples: 4
Max nTPM: 334.7
Min nTPM: 250.5
RHH5303_R3669
250.5
RHH5211_R3582
334.7
RHH5239_R3611
322.9
RHH5268_R3640
258.7
Memory CD4 T-cell Th17 nTPM: 293.3
Samples: 4
Max nTPM: 319.1
Min nTPM: 264.1
RHH5304_R3670
273.3
RHH5212_R3583
319.1
RHH5240_R3612
316.5
RHH5269_R3641
264.1
Memory CD4 T-cell Th2 nTPM: 271.7
Samples: 4
Max nTPM: 319.2
Min nTPM: 244.7
RHH5305_R3671
244.7
RHH5213_R3584
319.2
RHH5241_R3613
262.7
RHH5270_R3642
260.0
Naive CD4 T-cell nTPM: 256.3
Samples: 4
Max nTPM: 286.5
Min nTPM: 226.8
RHH5306_R3672
251.8
RHH5214_R3585
286.5
RHH5242_R3614
260.0
RHH5271_R3643
226.8
Naive CD8 T-cell nTPM: 234.8
Samples: 4
Max nTPM: 300.6
Min nTPM: 179.9
RHH5201_R3572
300.6
RHH5229_R3601
179.9
RHH5258_R3630
231.6
RHH5287_R3659
227.0
Non-Vd2 gdTCR nTPM: 318.7
Samples: 4
Max nTPM: 429.5
Min nTPM: 271.5
RHH5235_R3607
284.2
RHH5264_R3636
289.4
RHH5207_R3578
429.5
RHH5299_R3665
271.5
T-reg nTPM: 289.1
Samples: 4
Max nTPM: 348.2
Min nTPM: 259.8
RHH5301_R3667
261.7
RHH5237_R3609
259.8
RHH5266_R3638
286.8
RHH5209_R3580
348.2
Terminal effector memory CD4 T-cell nTPM: 311.6
Samples: 2
Max nTPM: 313.8
Min nTPM: 309.3
RHH5243_R3615
313.8
RHH5272_R3644
309.3
Terminal effector memory CD8 T-cell nTPM: 300.2
Samples: 4
Max nTPM: 333.5
Min nTPM: 277.8
RHH5232_R3604
292.0
RHH5204_R3575
333.5
RHH5261_R3633
277.8
RHH5296_R3662
297.4
Vd2 gdTCR nTPM: 267.7
Samples: 4
Max nTPM: 339.1
Min nTPM: 211.2
RHH5234_R3606
231.8
RHH5206_R3577
339.1
RHH5263_R3635
288.8
RHH5298_R3664
211.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
