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STARD3NL
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  • STARD3NL
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

STARD3NL
Synonyms MENTHO, MGC3251
Gene descriptioni

Full gene name according to HGNC.

STARD3 N-terminal like
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 7
Cytoband p14.1
Chromosome location (bp) 38178245 - 38230670
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000010270 (version 109)
Entrez gene 83930
HGNC HGNC:19169
UniProt O95772 (UniProt - Evidence at protein level)
neXtProt NX_O95772
GeneCards STARD3NL
Antibodypedia STARD3NL antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Tethering protein that creates contact site between the endoplasmic reticulum and late endosomes: localizes to late endosome membranes and contacts the endoplasmic reticulum via interaction with VAPA and VAPB 1.... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a late-endosomal protein that contains a conserved MENTAL (MLN64 N-terminal) domain. The encoded protein binds cholesterol molecules and may play a role in endosomal cholesterol transport through interactions with metastatic lymph node protein 64 (MLN64). [provided by RefSeq, Sep 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
STARD3NL-201
ENSP00000009041
ENST00000009041
O95772
[Direct mapping] STARD3 N-terminal-like protein
Show all
A0A024RA89
[Target identity:100%; Query identity:100%] STARD3 N-terminal like, isoform CRA_a
Show all
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005765 [lysosomal membrane]
GO:0005768 [endosome]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0010008 [endosome membrane]
GO:0015485 [cholesterol binding]
GO:0016020 [membrane]
GO:0030301 [cholesterol transport]
GO:0031902 [late endosome membrane]
GO:0042803 [protein homodimerization activity]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044232 [organelle membrane contact site]
GO:0099044 [vesicle tethering to endoplasmic reticulum]
GO:0140284 [endoplasmic reticulum-endosome membrane contact site]
Show all
234 aa
26.7 kDa
No 4
STARD3NL-202
ENSP00000379334
ENST00000396013
O95772
[Direct mapping] STARD3 N-terminal-like protein
Show all
A0A024RA89
[Target identity:100%; Query identity:100%] STARD3 N-terminal like, isoform CRA_a
Show all
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005765 [lysosomal membrane]
GO:0005768 [endosome]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0010008 [endosome membrane]
GO:0015485 [cholesterol binding]
GO:0016020 [membrane]
GO:0030301 [cholesterol transport]
GO:0031902 [late endosome membrane]
GO:0042803 [protein homodimerization activity]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044232 [organelle membrane contact site]
GO:0099044 [vesicle tethering to endoplasmic reticulum]
GO:0140284 [endoplasmic reticulum-endosome membrane contact site]
Show all
234 aa
26.7 kDa
No 4
STARD3NL-203
ENSP00000402028
ENST00000429075
C9JPX5
[Direct mapping] STARD3 N-terminal-like protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0031902 [late endosome membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
206 aa
23.5 kDa
No 4
STARD3NL-204
ENSP00000394000
ENST00000434197
C9JKL2
[Direct mapping] STARD3 N-terminal-like protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0031902 [late endosome membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
216 aa
24.8 kDa
No 4
STARD3NL-205
ENSP00000411933
ENST00000440144
C9J3F5
[Direct mapping] STARD3 N-terminal-like protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0031902 [late endosome membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
184 aa
21.3 kDa
No 4
STARD3NL-206
ENSP00000395455
ENST00000453225
C9JJ39
[Direct mapping] STARD3 N-terminal-like protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0031902 [late endosome membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
172 aa
19.9 kDa
No 4

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