HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:14.0 nTPM
GTEx:20.2 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:3.6 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005434
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.0
Sample id Sample description nTPM
Hippocampus
nTPM: 11.4
2621 Female, age 67, right hemisphere 13.6
1898 Male, age 80, left hemisphere 11.7
1855 Male, age 76, left hemisphere 11.4
2529 Female, age 94, left hemisphere 11.4
2148 Female, age 91, left hemisphere 10.2
1911 Female, age 85, right hemisphere 10.0
Dentate gyrus
nTPM: 10.0
2528 Male, age 74, both hemispheres 12.8
2530 Female, age 94, left hemisphere 11.6
1927 Female, age 91, both hemispheres 10.4
2531 Female, age 67, both hemispheres 9.8
2010 Male, age 76, both hemispheres 8.4
2246 Female, age 85, both hemispheres 6.9
Entorhinal gyrus
nTPM: 9.4
2117 Female, age 91, right hemisphere 14.9
2686 Male, age 75, right hemisphere 10.6
1787 Male, age 76, left hemisphere 9.7
2613 Female, age 94, left hemisphere 7.7
2764 Male, age 80, right hemisphere 6.8
1938 Female, age 85, left hemisphere 6.6
Hippocampus, CA1
nTPM: 8.6
2082 Female, age 91, right hemisphere 12.1
2045 Male, age 76, both hemispheres 8.2
1873 Female, age 85, both hemispheres 8.1
2527 Male, age 74, both hemispheres 7.8
2749 Male, age 80, left hemisphere 7.0
Hippocampus, CA2
nTPM: 14.0
1940 Female, age 85, left hemisphere 21.6
2437 Female, age 94, left hemisphere 16.4
2113 Female, age 91, right hemisphere 13.2
1963 Male, age 80, left hemisphere 12.9
2249 Male, age 74, both hemispheres 10.2
1892 Male, age 76, both hemispheres 9.6
Hippocampus, CA3
nTPM: 9.7
2436 Male, age 74, both hemispheres 16.4
1867 Male, age 76, both hemispheres 11.2
2861 Female, age 67, both hemispheres 9.7
1891 Female, age 85, both hemispheres 9.1
2137 Male, age 80, left hemisphere 8.0
2620 Female, age 94, left hemisphere 3.9
Parahippocampal cortex
nTPM: 8.9
2250 Female, age 67, right hemisphere 22.1
1990 Female, age 91, right hemisphere 10.9
2245 Female, age 91, both hemispheres 9.6
2018 Male, age 76, both hemispheres 8.6
2693 Female, age 94, both hemispheres 7.5
2622 Female, age 67, right hemisphere 6.8
1933 Female, age 85, both hemispheres 6.6
2532 Female, age 72, left hemisphere 6.5
1850 Male, age 80, both hemispheres 6.1
2692 Male, age 74, both hemispheres 4.6
Perirhinal gyrus
nTPM: 9.1
2521 Female, age 94, right hemisphere 15.9
1841 Female, age 85, right hemisphere 8.4
1847 Female, age 91, left hemisphere 8.2
1794 Male, age 80, right hemisphere 6.8
2848 Male, age 76, right hemisphere 5.9
Subiculum
nTPM: 9.8
2729 Female, age 91, right hemisphere 16.1
2042 Male, age 76, both hemispheres 11.0
2619 Male, age 74, both hemispheres 11.0
1901 Male, age 80, both hemispheres 8.1
1977 Female, age 85, both hemispheres 6.6
2438 Female, age 94, left hemisphere 6.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.2
Samples: 197

Max nTPM: 75.6
Min nTPM: 1.7
Std nTPM: 13.8
Median nTPM: 15.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 75.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 69.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 67.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 64.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 59.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 59.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 58.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 55.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 55.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 54.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 50.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.9
FF:10153-102I9 76 years, female 29.0
FF:10169-103B7 60 years, female 20.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Subiculum
nTPM: 3.7
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.1
Sample A Female 3.6
Sample B Female 4.1
Sample C Male 3.1
Sample D Male 4.0
Dorsal hippocampus
nTPM: 3.0
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 3.1
Sample C Male 3.2
Sample D Male 3.7
Entorhinal cortex
nTPM: 3.7
Samples: 4

Max nTPM: 5.2
Min nTPM: 1.9
Sample A Female 5.2
Sample B Female 4.8
Sample C Male 3.0
Sample D Male 1.9
Ventral hippocampus
nTPM: 3.3
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 4.2
Sample C Male 4.1
Sample D Male 2.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.6
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.8
Sample A Male 3.7
Sample B Male 2.8
Sample C Female 3.3
Sample D Female 4.4
Hippocampal formation
nTPM: 2.6
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.8
Sample A Male 1.8
Sample B Male 2.8
Sample C Female 2.3
Sample D Female 3.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
68745102 Antisense, RP_050210_01_C05, Mouse strain C57BL/6J (56 days, male) 0.6

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