MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.6 nTPM
HPA Brain:26.7 nTPM
GTEx:3.6 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:54.5 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.8
2586 Male, age 75, left hemisphere 23.5
1870 Female, age 42, unknown 20.8
1827 Male, age 72, unknown 20.5
2828 Female, age 72, unknown 17.4
1833 Male, age 53, unknown 15.8
2411 Female, age 72, unknown 15.2
2666 Male, age 74, left hemisphere 14.2
1830 Male, age 51, unknown 13.1
2219 Male, age 76, both hemispheres 12.0
2019 Male, age 18, unknown 5.3
Dorsal raphe nucleus
nTPM: 24.4
2298 Female, age 72, unknown 28.2
2047 Male, age 72, unknown 27.4
2016 Female, age 72, unknown 27.1
1828 Male, age 53, unknown 22.5
2750 Male, age 76, both hemispheres 16.6
Inferior colliculus
nTPM: 25.8
1848 Female, age 42, unknown 36.9
2097 Female, age 72, unknown 26.2
2849 Male, age 72, unknown 23.6
1890 Male, age 53, unknown 16.4
Median raphe nucleus
nTPM: 18.6
2220 Male, age 76, midline 18.6
Periaquaductal grey, anterior
nTPM: 26.1
1795 Male, age 51, unknown 29.9
2502 Female, age 75, unknown 25.0
1947 Male, age 18, unknown 23.2
Periaquaductal grey, dorsal
nTPM: 24.1
1840 Male, age 53, unknown 31.7
2464 Female, age 72, unknown 23.7
2850 Male, age 76, both hemispheres 22.4
1831 Male, age 72, unknown 18.4
Periaquaductal grey, lateral
nTPM: 26.7
2053 Male, age 18, unknown 39.1
2140 Male, age 76, both hemispheres 23.8
2272 Male, age 74, both hemispheres 17.3
Pretectal area
nTPM: 18.8
2825 Male, age 18, unknown 37.0
2224 Female, age 72, unknown 32.8
2273 Male, age 74, both hemispheres 21.3
2667 Female, age 75, unknown 19.4
1816 Male, age 51, unknown 16.9
2316 Male, age 76, right hemisphere 16.8
1944 Female, age 72, unknown 16.7
2407 Male, age 75, both hemispheres 13.8
1815 Male, age 53, unknown 11.9
2007 Male, age 72, unknown 10.3
1817 Female, age 42, unknown 10.1
Red nucleus
nTPM: 11.9
2725 Female, age 75, unknown 17.9
2227 Male, age 72, unknown 14.0
2769 Male, age 72, unknown 14.0
1954 Female, age 42, unknown 13.5
2503 Female, age 72, unknown 13.2
1821 Female, age 72, unknown 12.8
2823 Male, age 76, right hemisphere 11.7
1904 Male, age 53, unknown 11.3
2584 Male, age 75, left hemisphere 11.1
1865 Male, age 51, unknown 9.8
2588 Male, age 74, left hemisphere 8.0
2785 Male, age 18, unknown 5.0
Substantia nigra
nTPM: 16.9
2699 Male, age 18, unknown 22.6
1916 Female, age 42, unknown 21.8
2241 Male, age 72, unknown 18.8
2409 Female, age 72, unknown 17.1
2590 Female, age 75, unknown 15.9
1889 Female, age 72, unknown 15.5
1941 Male, age 53, unknown 15.2
2583 Male, age 75, right hemisphere 14.3
1851 Male, age 51, unknown 13.8
2665 Male, age 74, both hemispheres 13.6
Superior colliculus
nTPM: 16.1
2261 Male, age 18, unknown 21.8
1839 Male, age 51, unknown 21.0
1796 Male, age 53, unknown 20.3
1895 Male, age 76, right hemisphere 17.0
2587 Male, age 74, left hemisphere 16.2
2664 Male, age 75, both hemispheres 16.1
2087 Female, age 72, unknown 14.9
1995 Male, age 72, unknown 13.1
1913 Female, age 42, unknown 11.0
2668 Female, age 75, unknown 9.6
Ventral tegmental area
nTPM: 19.5
2021 Male, age 53, unknown 26.5
1915 Female, age 42, unknown 20.3
1942 Male, age 51, unknown 19.9
2218 Male, age 76, both hemispheres 17.4
2410 Female, age 72, unknown 17.3
2223 Female, age 72, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.6
Samples: 139

Max nTPM: 9.6
Min nTPM: 0.2
Std nTPM: 1.8
Median nTPM: 3.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 9.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 8.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 8.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 8.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 8.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 7.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 7.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 7.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 7.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 7.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 6.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.4
FF:10158-103A5 76 years, female 17.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.9
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.7
Sample A Female 1.2
Sample B Female 0.9
Sample C Male 0.7
Sample D Male 0.8
Midbrain
nTPM: 1.2
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.8
Sample A Female 1.2
Sample B Female 1.0
Sample C Male 1.8
Sample D Male 0.8
Periaqueductal gray
nTPM: 1.8
Samples: 3

Max nTPM: 2.1
Min nTPM: 1.6
Sample B Female 2.1
Sample C Male 1.7
Sample D Male 1.6
Superior colliculi
nTPM: 1.2
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.4
Sample A Female 1.6
Sample B Female 0.4
Sample C Male 0.9
Sample D Male 1.8

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