HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:29.4 nTPM
HPA Brain:40.3 nTPM
GTEx:29.4 nTPM
FANTOM5:75.7 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:93.8 nTPM
Allen mouse:13.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029065Antibody HPA056933Antibody CAB022641
Glial cells LowNot detectedLow
Neuronal cells MediumMediumMedium






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.3
Sample id Sample description nTPM
Hippocampus
nTPM: 30.8
1898 Male, age 80, left hemisphere 37.9
2621 Female, age 67, right hemisphere 34.8
1855 Male, age 76, left hemisphere 33.2
2148 Female, age 91, left hemisphere 26.9
1911 Female, age 85, right hemisphere 26.2
2529 Female, age 94, left hemisphere 25.5
Dentate gyrus
nTPM: 28.8
1927 Female, age 91, both hemispheres 32.2
2010 Male, age 76, both hemispheres 32.1
2246 Female, age 85, both hemispheres 30.4
2530 Female, age 94, left hemisphere 28.9
2531 Female, age 67, both hemispheres 25.2
2528 Male, age 74, both hemispheres 24.1
Entorhinal gyrus
nTPM: 35.4
2764 Male, age 80, right hemisphere 44.8
1938 Female, age 85, left hemisphere 38.9
1787 Male, age 76, left hemisphere 38.3
2613 Female, age 94, left hemisphere 35.8
2117 Female, age 91, right hemisphere 28.2
2686 Male, age 75, right hemisphere 26.2
Hippocampus, CA1
nTPM: 33.6
2749 Male, age 80, left hemisphere 50.4
1873 Female, age 85, both hemispheres 37.0
2527 Male, age 74, both hemispheres 32.0
2082 Female, age 91, right hemisphere 24.8
2045 Male, age 76, both hemispheres 23.4
Hippocampus, CA2
nTPM: 32.1
1892 Male, age 76, both hemispheres 44.3
1963 Male, age 80, left hemisphere 35.8
2249 Male, age 74, both hemispheres 31.5
2437 Female, age 94, left hemisphere 31.0
1940 Female, age 85, left hemisphere 26.1
2113 Female, age 91, right hemisphere 24.3
Hippocampus, CA3
nTPM: 32.1
1867 Male, age 76, both hemispheres 36.1
2436 Male, age 74, both hemispheres 35.6
2137 Male, age 80, left hemisphere 35.5
1891 Female, age 85, both hemispheres 29.2
2861 Female, age 67, both hemispheres 28.2
2620 Female, age 94, left hemisphere 27.8
Parahippocampal cortex
nTPM: 33.1
1850 Male, age 80, both hemispheres 42.2
1933 Female, age 85, both hemispheres 36.9
1990 Female, age 91, right hemisphere 35.7
2245 Female, age 91, both hemispheres 35.1
2532 Female, age 72, left hemisphere 33.7
2250 Female, age 67, right hemisphere 33.1
2692 Male, age 74, both hemispheres 31.6
2622 Female, age 67, right hemisphere 29.4
2693 Female, age 94, both hemispheres 28.3
2018 Male, age 76, both hemispheres 24.7
Perirhinal gyrus
nTPM: 40.3
1847 Female, age 91, left hemisphere 47.5
1794 Male, age 80, right hemisphere 45.7
1841 Female, age 85, right hemisphere 40.8
2848 Male, age 76, right hemisphere 34.0
2521 Female, age 94, right hemisphere 33.7
Subiculum
nTPM: 31.2
1977 Female, age 85, both hemispheres 37.2
2619 Male, age 74, both hemispheres 34.6
1901 Male, age 80, both hemispheres 34.5
2438 Female, age 94, left hemisphere 32.7
2042 Male, age 76, both hemispheres 25.1
2729 Female, age 91, right hemisphere 23.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 29.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.4
Samples: 197

Max nTPM: 49.8
Min nTPM: 13.6
Std nTPM: 7.5
Median nTPM: 27.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 49.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 47.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 47.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 45.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 45.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 45.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 44.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 44.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 44.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 43.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 42.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 75.7
FF:10169-103B7 60 years, female 86.2
FF:10153-102I9 76 years, female 65.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.2
Pig sample Sample description nTPM
Subiculum
nTPM: 25.1
Samples: 4

Max nTPM: 30.0
Min nTPM: 23.0
Sample A Female 30.0
Sample B Female 23.1
Sample C Male 24.1
Sample D Male 23.0
Dorsal hippocampus
nTPM: 29.2
Samples: 4

Max nTPM: 35.7
Min nTPM: 22.8
Sample A Female 35.7
Sample B Female 29.7
Sample C Male 28.6
Sample D Male 22.8
Entorhinal cortex
nTPM: 25.7
Samples: 4

Max nTPM: 28.4
Min nTPM: 23.2
Sample A Female 27.3
Sample B Female 28.4
Sample C Male 23.8
Sample D Male 23.2
Ventral hippocampus
nTPM: 28.2
Samples: 4

Max nTPM: 33.7
Min nTPM: 19.3
Sample A Female 28.4
Sample B Female 19.3
Sample C Male 33.7
Sample D Male 31.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 93.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 93.8
Samples: 4

Max nTPM: 106.5
Min nTPM: 87.1
Sample A Male 93.9
Sample B Male 106.5
Sample C Female 87.1
Sample D Female 87.5
Hippocampal formation
nTPM: 87.6
Samples: 4

Max nTPM: 93.8
Min nTPM: 83.2
Sample A Male 93.8
Sample B Male 83.2
Sample C Female 83.5
Sample D Female 89.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.8
413805 Antisense, RP_040809_01_F04, Mouse strain C57BL/6J (56 days, male) 13.8

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