HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:42.8 nTPM
HPA Brain:44.8 nTPM
GTEx:42.8 nTPM
FANTOM5:74.1 Scaled Tags Per Million
Pig:31.2 nTPM
Mouse:13.6 nTPM
Allen mouse:14.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029773Antibody CAB004390Antibody CAB072859Antibody CAB072860
Glial cells Not detectedHighMediumMedium
Neuronal cells Not detectedHighLowMedium









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Hippocampus
nTPM: 43.9
1898 Male, age 80, left hemisphere 50.8
1855 Male, age 76, left hemisphere 47.6
2148 Female, age 91, left hemisphere 44.2
2621 Female, age 67, right hemisphere 42.6
2529 Female, age 94, left hemisphere 40.1
1911 Female, age 85, right hemisphere 37.8
Dentate gyrus
nTPM: 44.1
2530 Female, age 94, left hemisphere 49.1
2531 Female, age 67, both hemispheres 46.6
2010 Male, age 76, both hemispheres 46.0
1927 Female, age 91, both hemispheres 44.3
2528 Male, age 74, both hemispheres 39.6
2246 Female, age 85, both hemispheres 39.3
Entorhinal gyrus
nTPM: 40.1
2613 Female, age 94, left hemisphere 42.8
2117 Female, age 91, right hemisphere 42.6
2764 Male, age 80, right hemisphere 39.8
2686 Male, age 75, right hemisphere 39.2
1787 Male, age 76, left hemisphere 38.7
1938 Female, age 85, left hemisphere 37.8
Hippocampus, CA1
nTPM: 44.5
2749 Male, age 80, left hemisphere 52.9
2045 Male, age 76, both hemispheres 47.3
1873 Female, age 85, both hemispheres 43.4
2082 Female, age 91, right hemisphere 41.4
2527 Male, age 74, both hemispheres 37.7
Hippocampus, CA2
nTPM: 43.3
1892 Male, age 76, both hemispheres 48.0
1963 Male, age 80, left hemisphere 46.2
2437 Female, age 94, left hemisphere 44.6
1940 Female, age 85, left hemisphere 41.6
2249 Male, age 74, both hemispheres 40.4
2113 Female, age 91, right hemisphere 39.1
Hippocampus, CA3
nTPM: 44.8
1867 Male, age 76, both hemispheres 47.8
2861 Female, age 67, both hemispheres 46.1
2137 Male, age 80, left hemisphere 45.7
2620 Female, age 94, left hemisphere 45.5
2436 Male, age 74, both hemispheres 44.9
1891 Female, age 85, both hemispheres 38.9
Parahippocampal cortex
nTPM: 40.1
2622 Female, age 67, right hemisphere 44.5
2018 Male, age 76, both hemispheres 42.7
2245 Female, age 91, both hemispheres 42.3
2250 Female, age 67, right hemisphere 40.9
2532 Female, age 72, left hemisphere 40.5
1990 Female, age 91, right hemisphere 39.4
1850 Male, age 80, both hemispheres 38.9
1933 Female, age 85, both hemispheres 37.8
2692 Male, age 74, both hemispheres 37.5
2693 Female, age 94, both hemispheres 36.4
Perirhinal gyrus
nTPM: 41.5
1794 Male, age 80, right hemisphere 44.4
1847 Female, age 91, left hemisphere 44.0
2521 Female, age 94, right hemisphere 43.0
1841 Female, age 85, right hemisphere 41.5
2848 Male, age 76, right hemisphere 34.5
Subiculum
nTPM: 41.4
2729 Female, age 91, right hemisphere 44.6
2619 Male, age 74, both hemispheres 43.6
2042 Male, age 76, both hemispheres 41.9
2438 Female, age 94, left hemisphere 41.8
1901 Male, age 80, both hemispheres 39.8
1977 Female, age 85, both hemispheres 36.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 42.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.8
Samples: 197

Max nTPM: 63.3
Min nTPM: 20.9
Std nTPM: 7.7
Median nTPM: 42.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 63.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 63.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 63.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 61.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 60.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 60.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 58.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 58.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 58.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 57.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 56.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 74.1
FF:10153-102I9 76 years, female 77.7
FF:10169-103B7 60 years, female 70.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.2
Pig sample Sample description nTPM
Subiculum
nTPM: 27.6
Samples: 4

Max nTPM: 34.6
Min nTPM: 23.2
Sample A Female 34.6
Sample B Female 25.9
Sample C Male 26.5
Sample D Male 23.2
Dorsal hippocampus
nTPM: 29.3
Samples: 4

Max nTPM: 35.3
Min nTPM: 23.1
Sample A Female 35.3
Sample B Female 26.8
Sample C Male 32.1
Sample D Male 23.1
Entorhinal cortex
nTPM: 29.7
Samples: 4

Max nTPM: 31.3
Min nTPM: 26.8
Sample A Female 31.2
Sample B Female 31.3
Sample C Male 29.6
Sample D Male 26.8
Ventral hippocampus
nTPM: 31.2
Samples: 4

Max nTPM: 36.9
Min nTPM: 24.1
Sample A Female 31.7
Sample B Female 24.1
Sample C Male 36.9
Sample D Male 32.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 13.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.7
Samples: 4

Max nTPM: 12.3
Min nTPM: 10.7
Sample A Male 12.2
Sample B Male 10.7
Sample C Female 12.3
Sample D Female 11.6
Hippocampal formation
nTPM: 13.6
Samples: 4

Max nTPM: 15.9
Min nTPM: 12.1
Sample A Male 15.9
Sample B Male 12.3
Sample C Female 12.1
Sample D Female 13.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.9
576431 Antisense, RP_040826_01_H05, Mouse strain C57BL/6J (56 days, male) 14.9

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