MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:107.9 nTPM
HPA Brain:202.0 nTPM
GTEx:107.9 nTPM
FANTOM5:150.0 Scaled Tags Per Million
Pig:7.9 nTPM
Mouse:2.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 202.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 145.3
2019 Male, age 18, unknown 179.7
2411 Female, age 72, unknown 179.5
1830 Male, age 51, unknown 174.0
1833 Male, age 53, unknown 160.0
2586 Male, age 75, left hemisphere 158.0
2828 Female, age 72, unknown 154.6
1870 Female, age 42, unknown 151.6
1827 Male, age 72, unknown 106.5
2666 Male, age 74, left hemisphere 103.1
2219 Male, age 76, both hemispheres 86.3
Dorsal raphe nucleus
nTPM: 104.5
2750 Male, age 76, both hemispheres 194.6
2016 Female, age 72, unknown 115.3
1828 Male, age 53, unknown 91.3
2298 Female, age 72, unknown 64.8
2047 Male, age 72, unknown 56.5
Inferior colliculus
nTPM: 80.8
1848 Female, age 42, unknown 89.9
1890 Male, age 53, unknown 84.7
2849 Male, age 72, unknown 79.9
2097 Female, age 72, unknown 68.8
Median raphe nucleus
nTPM: 71.1
2220 Male, age 76, midline 71.1
Periaquaductal grey, anterior
nTPM: 87.7
2502 Female, age 75, unknown 92.3
1947 Male, age 18, unknown 88.2
1795 Male, age 51, unknown 82.7
Periaquaductal grey, dorsal
nTPM: 70.2
2464 Female, age 72, unknown 112.0
1831 Male, age 72, unknown 88.6
1840 Male, age 53, unknown 47.0
2850 Male, age 76, both hemispheres 33.0
Periaquaductal grey, lateral
nTPM: 79.3
2053 Male, age 18, unknown 96.9
2272 Male, age 74, both hemispheres 91.4
2140 Male, age 76, both hemispheres 49.7
Pretectal area
nTPM: 103.9
2316 Male, age 76, right hemisphere 157.0
2667 Female, age 75, unknown 146.1
1815 Male, age 53, unknown 132.9
2407 Male, age 75, both hemispheres 117.2
2273 Male, age 74, both hemispheres 104.4
2007 Male, age 72, unknown 100.7
1817 Female, age 42, unknown 99.0
2825 Male, age 18, unknown 91.3
1944 Female, age 72, unknown 68.7
2224 Female, age 72, unknown 67.9
1816 Male, age 51, unknown 57.5
Red nucleus
nTPM: 202.0
2823 Male, age 76, right hemisphere 276.0
1904 Male, age 53, unknown 243.6
2503 Female, age 72, unknown 225.8
2769 Male, age 72, unknown 223.7
2227 Male, age 72, unknown 223.0
1865 Male, age 51, unknown 222.4
2785 Male, age 18, unknown 206.2
1821 Female, age 72, unknown 199.6
2588 Male, age 74, left hemisphere 195.1
1954 Female, age 42, unknown 178.5
2584 Male, age 75, left hemisphere 130.9
2725 Female, age 75, unknown 99.8
Substantia nigra
nTPM: 102.3
2583 Male, age 75, right hemisphere 158.3
2409 Female, age 72, unknown 151.5
1851 Male, age 51, unknown 130.8
2699 Male, age 18, unknown 100.1
2590 Female, age 75, unknown 99.2
1889 Female, age 72, unknown 96.3
1916 Female, age 42, unknown 77.5
1941 Male, age 53, unknown 73.4
2241 Male, age 72, unknown 70.4
2665 Male, age 74, both hemispheres 65.0
Superior colliculus
nTPM: 129.2
1995 Male, age 72, unknown 204.3
1913 Female, age 42, unknown 177.6
2668 Female, age 75, unknown 154.1
1895 Male, age 76, right hemisphere 133.0
1839 Male, age 51, unknown 127.3
2587 Male, age 74, left hemisphere 122.5
1796 Male, age 53, unknown 114.7
2664 Male, age 75, both hemispheres 97.7
2087 Female, age 72, unknown 84.3
2261 Male, age 18, unknown 76.2
Ventral tegmental area
nTPM: 116.8
2223 Female, age 72, unknown 151.4
2410 Female, age 72, unknown 132.9
2021 Male, age 53, unknown 114.0
1915 Female, age 42, unknown 108.4
1942 Male, age 51, unknown 108.4
2218 Male, age 76, both hemispheres 85.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 107.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 107.9
Samples: 139

Max nTPM: 355.4
Min nTPM: 28.6
Std nTPM: 60.5
Median nTPM: 90.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 355.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 319.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 307.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 279.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 265.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 262.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 233.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 228.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 215.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 207.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 207.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 150.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 150.0
FF:10158-103A5 76 years, female 150.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.0
Samples: 4

Max nTPM: 19.4
Min nTPM: 3.3
Sample A Female 5.0
Sample B Female 19.4
Sample C Male 3.3
Sample D Male 4.2
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 6.5
Min nTPM: 1.7
Sample A Female 6.5
Sample B Female 1.8
Sample C Male 2.2
Sample D Male 1.7
Periaqueductal gray
nTPM: 2.0
Samples: 3

Max nTPM: 2.4
Min nTPM: 1.5
Sample B Female 1.5
Sample C Male 2.4
Sample D Male 2.2
Superior colliculi
nTPM: 7.9
Samples: 4

Max nTPM: 17.4
Min nTPM: 2.8
Sample A Female 7.8
Sample B Female 17.4
Sample C Male 2.8
Sample D Male 3.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.9
Sample A Male 2.8
Sample B Male 1.9
Sample C Female 2.5
Sample D Female 2.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
79544848 Antisense, RP_071101_01_A09, Mouse strain C57BL/6J (56 days, male) 0.3

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