MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.4 nTPM
HPA Brain:40.6 nTPM
GTEx:44.4 nTPM
FANTOM5:37.1 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:30.1 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.3
1870 Female, age 42, unknown 44.3
2411 Female, age 72, unknown 43.2
2019 Male, age 18, unknown 37.6
1833 Male, age 53, unknown 36.8
2828 Female, age 72, unknown 35.8
1830 Male, age 51, unknown 35.3
1827 Male, age 72, unknown 33.3
2219 Male, age 76, both hemispheres 30.8
2666 Male, age 74, left hemisphere 28.4
2586 Male, age 75, left hemisphere 27.6
Dorsal raphe nucleus
nTPM: 39.5
2298 Female, age 72, unknown 42.7
2750 Male, age 76, both hemispheres 40.7
1828 Male, age 53, unknown 38.4
2047 Male, age 72, unknown 38.2
2016 Female, age 72, unknown 37.5
Inferior colliculus
nTPM: 33.5
2097 Female, age 72, unknown 36.2
1890 Male, age 53, unknown 34.1
1848 Female, age 42, unknown 32.0
2849 Male, age 72, unknown 31.6
Median raphe nucleus
nTPM: 37.1
2220 Male, age 76, midline 37.1
Periaquaductal grey, anterior
nTPM: 35.6
1947 Male, age 18, unknown 37.4
2502 Female, age 75, unknown 36.2
1795 Male, age 51, unknown 33.2
Periaquaductal grey, dorsal
nTPM: 33.4
2464 Female, age 72, unknown 35.4
1840 Male, age 53, unknown 34.2
2850 Male, age 76, both hemispheres 34.0
1831 Male, age 72, unknown 29.8
Periaquaductal grey, lateral
nTPM: 31.9
2272 Male, age 74, both hemispheres 33.6
2140 Male, age 76, both hemispheres 31.9
2053 Male, age 18, unknown 30.3
Pretectal area
nTPM: 35.0
1817 Female, age 42, unknown 39.1
2007 Male, age 72, unknown 38.1
1815 Male, age 53, unknown 37.1
2224 Female, age 72, unknown 37.1
2667 Female, age 75, unknown 37.0
2316 Male, age 76, right hemisphere 36.3
2273 Male, age 74, both hemispheres 35.1
1944 Female, age 72, unknown 34.5
2825 Male, age 18, unknown 31.8
1816 Male, age 51, unknown 30.5
2407 Male, age 75, both hemispheres 28.0
Red nucleus
nTPM: 40.6
1904 Male, age 53, unknown 48.4
1954 Female, age 42, unknown 47.5
1865 Male, age 51, unknown 44.7
1821 Female, age 72, unknown 43.2
2503 Female, age 72, unknown 43.1
2823 Male, age 76, right hemisphere 40.5
2785 Male, age 18, unknown 39.9
2227 Male, age 72, unknown 39.5
2725 Female, age 75, unknown 37.9
2769 Male, age 72, unknown 36.3
2588 Male, age 74, left hemisphere 34.3
2584 Male, age 75, left hemisphere 31.6
Substantia nigra
nTPM: 37.7
2241 Male, age 72, unknown 43.9
2409 Female, age 72, unknown 43.4
1851 Male, age 51, unknown 41.2
1889 Female, age 72, unknown 40.5
2590 Female, age 75, unknown 37.3
1916 Female, age 42, unknown 36.8
2699 Male, age 18, unknown 35.6
1941 Male, age 53, unknown 34.5
2665 Male, age 74, both hemispheres 32.0
2583 Male, age 75, right hemisphere 31.4
Superior colliculus
nTPM: 35.2
1913 Female, age 42, unknown 43.2
1995 Male, age 72, unknown 39.3
2587 Male, age 74, left hemisphere 38.8
2261 Male, age 18, unknown 37.7
2668 Female, age 75, unknown 34.3
1796 Male, age 53, unknown 33.7
1895 Male, age 76, right hemisphere 33.3
1839 Male, age 51, unknown 33.1
2087 Female, age 72, unknown 33.0
2664 Male, age 75, both hemispheres 25.3
Ventral tegmental area
nTPM: 38.8
2410 Female, age 72, unknown 47.8
1942 Male, age 51, unknown 40.0
2218 Male, age 76, both hemispheres 38.8
1915 Female, age 42, unknown 38.3
2223 Female, age 72, unknown 36.4
2021 Male, age 53, unknown 31.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.4
Samples: 139

Max nTPM: 71.2
Min nTPM: 25.1
Std nTPM: 9.7
Median nTPM: 42.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 71.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 70.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 67.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 64.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 63.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 62.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 62.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 62.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 62.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 61.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.1
FF:10158-103A5 76 years, female 37.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.5
Samples: 4

Max nTPM: 23.9
Min nTPM: 14.1
Sample A Female 23.9
Sample B Female 17.2
Sample C Male 14.9
Sample D Male 14.1
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 38.4
Min nTPM: 13.2
Sample A Female 38.4
Sample B Female 16.8
Sample C Male 18.5
Sample D Male 13.2
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 14.6
Min nTPM: 13.0
Sample B Female 13.0
Sample C Male 14.6
Sample D Male 13.8
Superior colliculi
nTPM: 24.9
Samples: 4

Max nTPM: 37.2
Min nTPM: 16.4
Sample A Female 26.1
Sample B Female 37.2
Sample C Male 19.9
Sample D Male 16.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.1
Samples: 4

Max nTPM: 34.9
Min nTPM: 26.2
Sample A Male 34.9
Sample B Male 32.2
Sample C Female 26.2
Sample D Female 27.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
74988456 Antisense, RP_060315_05_D11, Mouse strain C57BL/6J (56 days, male) 2.7
70431349 Antisense, RP_050614_02_F07, Mouse strain C57BL/6J (56 days, male) 2.6

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