MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA Brain:20.2 nTPM
GTEx:14.7 nTPM
FANTOM5:97.1 Scaled Tags Per Million
Pig:115.9 nTPM
Mouse:37.5 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.7
1870 Female, age 42, unknown 18.8
1827 Male, age 72, unknown 18.7
2666 Male, age 74, left hemisphere 18.6
2019 Male, age 18, unknown 18.4
1833 Male, age 53, unknown 18.2
2411 Female, age 72, unknown 17.7
2586 Male, age 75, left hemisphere 17.7
2219 Male, age 76, both hemispheres 17.3
1830 Male, age 51, unknown 17.1
2828 Female, age 72, unknown 14.2
Dorsal raphe nucleus
nTPM: 18.4
2047 Male, age 72, unknown 18.9
1828 Male, age 53, unknown 18.5
2016 Female, age 72, unknown 18.4
2298 Female, age 72, unknown 18.4
2750 Male, age 76, both hemispheres 17.7
Inferior colliculus
nTPM: 18.9
2097 Female, age 72, unknown 20.8
1890 Male, age 53, unknown 19.5
1848 Female, age 42, unknown 18.0
2849 Male, age 72, unknown 17.2
Median raphe nucleus
nTPM: 18.8
2220 Male, age 76, midline 18.8
Periaquaductal grey, anterior
nTPM: 19.4
1947 Male, age 18, unknown 21.0
2502 Female, age 75, unknown 20.3
1795 Male, age 51, unknown 16.9
Periaquaductal grey, dorsal
nTPM: 18.2
1840 Male, age 53, unknown 19.0
2464 Female, age 72, unknown 18.1
1831 Male, age 72, unknown 17.9
2850 Male, age 76, both hemispheres 17.7
Periaquaductal grey, lateral
nTPM: 16.9
2053 Male, age 18, unknown 17.8
2272 Male, age 74, both hemispheres 17.6
2140 Male, age 76, both hemispheres 15.4
Pretectal area
nTPM: 19.3
1816 Male, age 51, unknown 23.0
1944 Female, age 72, unknown 21.3
2007 Male, age 72, unknown 20.4
1817 Female, age 42, unknown 19.6
2224 Female, age 72, unknown 19.2
1815 Male, age 53, unknown 19.1
2273 Male, age 74, both hemispheres 18.9
2407 Male, age 75, both hemispheres 18.6
2667 Female, age 75, unknown 18.4
2825 Male, age 18, unknown 18.2
2316 Male, age 76, right hemisphere 16.2
Red nucleus
nTPM: 17.3
1821 Female, age 72, unknown 20.4
2584 Male, age 75, left hemisphere 18.8
2725 Female, age 75, unknown 18.1
2823 Male, age 76, right hemisphere 17.7
1954 Female, age 42, unknown 17.6
1865 Male, age 51, unknown 17.5
2503 Female, age 72, unknown 17.4
1904 Male, age 53, unknown 16.9
2588 Male, age 74, left hemisphere 16.5
2785 Male, age 18, unknown 16.4
2227 Male, age 72, unknown 15.4
2769 Male, age 72, unknown 15.3
Substantia nigra
nTPM: 20.2
2241 Male, age 72, unknown 27.7
1941 Male, age 53, unknown 22.0
1916 Female, age 42, unknown 21.1
1889 Female, age 72, unknown 20.5
2409 Female, age 72, unknown 19.6
1851 Male, age 51, unknown 19.1
2583 Male, age 75, right hemisphere 18.5
2665 Male, age 74, both hemispheres 18.4
2590 Female, age 75, unknown 17.7
2699 Male, age 18, unknown 17.7
Superior colliculus
nTPM: 18.1
2664 Male, age 75, both hemispheres 20.0
2668 Female, age 75, unknown 19.5
1895 Male, age 76, right hemisphere 19.1
2261 Male, age 18, unknown 19.1
2087 Female, age 72, unknown 19.0
1839 Male, age 51, unknown 18.0
2587 Male, age 74, left hemisphere 17.3
1913 Female, age 42, unknown 16.7
1796 Male, age 53, unknown 16.2
1995 Male, age 72, unknown 15.8
Ventral tegmental area
nTPM: 18.1
2218 Male, age 76, both hemispheres 19.4
1942 Male, age 51, unknown 18.6
2223 Female, age 72, unknown 18.6
1915 Female, age 42, unknown 18.2
2410 Female, age 72, unknown 17.2
2021 Male, age 53, unknown 16.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 139

Max nTPM: 24.4
Min nTPM: 7.0
Std nTPM: 3.0
Median nTPM: 14.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 24.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 23.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 21.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 21.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 20.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 19.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 19.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 18.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 18.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 18.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.1
FF:10158-103A5 76 years, female 97.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 115.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 101.1
Samples: 4

Max nTPM: 132.5
Min nTPM: 67.6
Sample A Female 132.5
Sample B Female 92.0
Sample C Male 112.3
Sample D Male 67.6
Midbrain
nTPM: 115.9
Samples: 4

Max nTPM: 137.6
Min nTPM: 93.2
Sample A Female 93.2
Sample B Female 109.2
Sample C Male 137.6
Sample D Male 123.6
Periaqueductal gray
nTPM: 95.8
Samples: 3

Max nTPM: 104.6
Min nTPM: 90.9
Sample B Female 90.9
Sample C Male 104.6
Sample D Male 91.9
Superior colliculi
nTPM: 114.6
Samples: 4

Max nTPM: 132.5
Min nTPM: 80.1
Sample A Female 132.5
Sample B Female 80.1
Sample C Male 131.8
Sample D Male 113.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.5
Samples: 4

Max nTPM: 40.3
Min nTPM: 35.2
Sample A Male 35.2
Sample B Male 40.3
Sample C Female 37.2
Sample D Female 37.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
73573181 Antisense, RP_051121_03_D10, Mouse strain C57BL/6J (56 days, male) 6.8

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