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RGPD5
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  • RGPD5
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RGPD5
Synonyms BS-63, DKFZp686I1842, RGP5
Gene descriptioni

Full gene name according to HGNC.

RANBP2 like and GRIP domain containing 5
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband q13
Chromosome location (bp) 109792758 - 109857705
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000015568 (version 109)
Entrez gene 84220
HGNC HGNC:32418
UniProt Q99666 (UniProt - Evidence at protein level)
neXtProt NX_Q99666
GeneCards RGPD5
Antibodypedia RGPD5 antibodies


PROTEIN FUNCTION
Gene summary (Entrez)i

Useful information about the gene from Entrez

RAN is a small GTP-binding protein of the RAS superfamily that is associated with the nuclear membrane and is thought to control a variety of cellular functions through its interactions with other proteins. This gene shares a high degree of sequence identity with RANBP2, a large RAN-binding protein localized at the cytoplasmic side of the nuclear pore complex. It is believed that this RANBP2 gene family member arose from a duplication event 3 Mb distal to RANBP2. Alternative splicing has been observed for this locus and two variants are described. Additional splicing is suggested but complete sequence for further transcripts has not been determined. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RGPD5-201
ENSP00000016946
ENST00000016946
Q99666
[Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6
Show all
V9HWE4
[Target identity:100%; Query identity:100%] Epididymis luminal protein 161; Testis secretory sperm-binding protein Li 226n
Show all
   MEMSAT3 predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005643 [nuclear pore]
GO:0005737 [cytoplasm]
GO:0006607 [NLS-bearing protein import into nucleus]
GO:0046907 [intracellular transport]
Show all
1765 aa
198.9 kDa
No 0
RGPD5-202
ENSP00000272454
ENST00000272454
Q99666
[Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6
Show all
   MEMSAT3 predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005643 [nuclear pore]
GO:0005737 [cytoplasm]
GO:0006607 [NLS-bearing protein import into nucleus]
GO:0046907 [intracellular transport]
Show all
904 aa
103.3 kDa
No 0
RGPD5-203
ENSP00000376962
ENST00000393283
Q99666
[Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6
Show all
   MEMSAT3 predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005643 [nuclear pore]
GO:0005737 [cytoplasm]
GO:0006607 [NLS-bearing protein import into nucleus]
GO:0046907 [intracellular transport]
Show all
904 aa
103.3 kDa
No 0
RGPD5-205
ENSP00000392556
ENST00000430736
C9J1W9
[Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0005515 [protein binding]
Show all
134 aa
15.7 kDa
No 0
RGPD5-206
ENSP00000400797
ENST00000432606
C9J1P2
[Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0005515 [protein binding]
Show all
56 aa
6.8 kDa
No 0
RGPD5-207
ENSP00000411548
ENST00000441344
C9J6W1
[Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6; RANBP2-like and GRIP domain-containing protein 8
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0005515 [protein binding]
Show all
152 aa
18 kDa
No 0

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