MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:194.6 nTPM
HPA Brain:193.4 nTPM
GTEx:194.6 nTPM
FANTOM5:28.6 Scaled Tags Per Million
Pig:325.7 nTPM
Mouse:259.2 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 193.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 146.6
2411 Female, age 72, unknown 184.5
1870 Female, age 42, unknown 172.3
1830 Male, age 51, unknown 169.1
2019 Male, age 18, unknown 166.4
1833 Male, age 53, unknown 150.0
2666 Male, age 74, left hemisphere 148.8
2828 Female, age 72, unknown 142.9
1827 Male, age 72, unknown 138.7
2219 Male, age 76, both hemispheres 107.4
2586 Male, age 75, left hemisphere 86.3
Dorsal raphe nucleus
nTPM: 118.9
2750 Male, age 76, both hemispheres 243.1
1828 Male, age 53, unknown 100.8
2298 Female, age 72, unknown 86.0
2016 Female, age 72, unknown 82.2
2047 Male, age 72, unknown 82.2
Inferior colliculus
nTPM: 107.6
1848 Female, age 42, unknown 118.5
2849 Male, age 72, unknown 112.9
2097 Female, age 72, unknown 101.4
1890 Male, age 53, unknown 97.5
Median raphe nucleus
nTPM: 141.0
2220 Male, age 76, midline 141.0
Periaquaductal grey, anterior
nTPM: 104.4
1947 Male, age 18, unknown 114.7
2502 Female, age 75, unknown 101.7
1795 Male, age 51, unknown 96.8
Periaquaductal grey, dorsal
nTPM: 81.7
2464 Female, age 72, unknown 105.7
1831 Male, age 72, unknown 100.2
1840 Male, age 53, unknown 68.0
2850 Male, age 76, both hemispheres 52.9
Periaquaductal grey, lateral
nTPM: 92.4
2272 Male, age 74, both hemispheres 121.0
2053 Male, age 18, unknown 102.3
2140 Male, age 76, both hemispheres 53.7
Pretectal area
nTPM: 131.9
1817 Female, age 42, unknown 183.0
1815 Male, age 53, unknown 181.5
2007 Male, age 72, unknown 172.2
1944 Female, age 72, unknown 168.1
2316 Male, age 76, right hemisphere 138.7
1816 Male, age 51, unknown 123.0
2825 Male, age 18, unknown 112.1
2273 Male, age 74, both hemispheres 109.5
2407 Male, age 75, both hemispheres 104.6
2224 Female, age 72, unknown 98.3
2667 Female, age 75, unknown 59.9
Red nucleus
nTPM: 193.4
2823 Male, age 76, right hemisphere 238.7
1865 Male, age 51, unknown 238.6
2588 Male, age 74, left hemisphere 215.1
1904 Male, age 53, unknown 204.4
2725 Female, age 75, unknown 200.9
2785 Male, age 18, unknown 198.7
2503 Female, age 72, unknown 188.9
1954 Female, age 42, unknown 182.5
1821 Female, age 72, unknown 179.2
2227 Male, age 72, unknown 170.7
2769 Male, age 72, unknown 169.5
2584 Male, age 75, left hemisphere 134.0
Substantia nigra
nTPM: 100.5
1889 Female, age 72, unknown 159.4
2590 Female, age 75, unknown 140.4
2583 Male, age 75, right hemisphere 107.2
1851 Male, age 51, unknown 104.3
2409 Female, age 72, unknown 99.1
1941 Male, age 53, unknown 85.8
1916 Female, age 42, unknown 85.0
2241 Male, age 72, unknown 82.2
2665 Male, age 74, both hemispheres 75.3
2699 Male, age 18, unknown 66.3
Superior colliculus
nTPM: 154.0
2668 Female, age 75, unknown 209.6
1913 Female, age 42, unknown 182.8
2587 Male, age 74, left hemisphere 171.6
1995 Male, age 72, unknown 163.4
2087 Female, age 72, unknown 158.5
2261 Male, age 18, unknown 156.9
1796 Male, age 53, unknown 156.0
1895 Male, age 76, right hemisphere 154.7
1839 Male, age 51, unknown 115.5
2664 Male, age 75, both hemispheres 71.1
Ventral tegmental area
nTPM: 123.7
2223 Female, age 72, unknown 170.2
2218 Male, age 76, both hemispheres 126.3
2410 Female, age 72, unknown 125.0
2021 Male, age 53, unknown 110.2
1942 Male, age 51, unknown 109.1
1915 Female, age 42, unknown 101.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 194.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 194.6
Samples: 139

Max nTPM: 904.7
Min nTPM: 29.8
Std nTPM: 147.0
Median nTPM: 154.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 904.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 807.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 714.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 645.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 633.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 538.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 451.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 451.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 423.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 410.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 408.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.6
FF:10158-103A5 76 years, female 28.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 325.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 254.9
Samples: 4

Max nTPM: 398.1
Min nTPM: 138.8
Sample A Female 263.2
Sample B Female 138.8
Sample C Male 219.4
Sample D Male 398.1
Midbrain
nTPM: 325.8
Samples: 4

Max nTPM: 570.3
Min nTPM: 214.5
Sample A Female 570.3
Sample B Female 260.6
Sample C Male 257.6
Sample D Male 214.5
Periaqueductal gray
nTPM: 184.9
Samples: 3

Max nTPM: 200.7
Min nTPM: 166.4
Sample B Female 200.7
Sample C Male 166.4
Sample D Male 187.6
Superior colliculi
nTPM: 254.9
Samples: 4

Max nTPM: 312.2
Min nTPM: 136.6
Sample A Female 281.7
Sample B Female 136.6
Sample C Male 289.0
Sample D Male 312.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 259.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 259.2
Samples: 4

Max nTPM: 275.1
Min nTPM: 248.4
Sample A Male 275.1
Sample B Male 248.4
Sample C Female 253.4
Sample D Female 259.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
1007 Antisense, RP_Baylor_103218, Mouse strain C57BL/6J (56 days, male) 8.3
1006 Antisense, RP_Baylor_103218, Mouse strain C57BL/6J (56 days, male) 7.7
1008 Sense, RPS_Baylor_37084, Mouse strain C57BL/6J (56 days, male) 0.8

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