HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:29.2 nTPM
HPA Brain:51.6 nTPM
GTEx:29.2 nTPM
FANTOM5:55.8 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:36.9 nTPM
Allen mouse:1.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA046651Antibody CAB046010
Glial cells LowLow
Neuronal cells MediumMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 51.6
Sample id Sample description nTPM
Hippocampus
nTPM: 51.6
2529 Female, age 94, left hemisphere 59.1
1898 Male, age 80, left hemisphere 54.0
2148 Female, age 91, left hemisphere 51.3
1911 Female, age 85, right hemisphere 49.4
2621 Female, age 67, right hemisphere 48.6
1855 Male, age 76, left hemisphere 47.5
Dentate gyrus
nTPM: 50.0
2010 Male, age 76, both hemispheres 56.7
2530 Female, age 94, left hemisphere 54.4
2531 Female, age 67, both hemispheres 50.2
1927 Female, age 91, both hemispheres 46.9
2246 Female, age 85, both hemispheres 46.0
2528 Male, age 74, both hemispheres 45.5
Entorhinal gyrus
nTPM: 50.7
1787 Male, age 76, left hemisphere 53.1
1938 Female, age 85, left hemisphere 52.0
2686 Male, age 75, right hemisphere 52.0
2764 Male, age 80, right hemisphere 51.3
2117 Female, age 91, right hemisphere 50.9
2613 Female, age 94, left hemisphere 44.8
Hippocampus, CA1
nTPM: 51.5
2749 Male, age 80, left hemisphere 56.2
2045 Male, age 76, both hemispheres 51.1
1873 Female, age 85, both hemispheres 50.7
2082 Female, age 91, right hemisphere 50.2
2527 Male, age 74, both hemispheres 49.4
Hippocampus, CA2
nTPM: 50.9
2249 Male, age 74, both hemispheres 53.5
1892 Male, age 76, both hemispheres 52.6
1940 Female, age 85, left hemisphere 52.0
1963 Male, age 80, left hemisphere 50.3
2113 Female, age 91, right hemisphere 49.2
2437 Female, age 94, left hemisphere 47.9
Hippocampus, CA3
nTPM: 49.1
2137 Male, age 80, left hemisphere 54.6
1867 Male, age 76, both hemispheres 50.4
2861 Female, age 67, both hemispheres 50.1
2620 Female, age 94, left hemisphere 48.7
1891 Female, age 85, both hemispheres 46.9
2436 Male, age 74, both hemispheres 44.2
Parahippocampal cortex
nTPM: 51.0
2532 Female, age 72, left hemisphere 56.7
2018 Male, age 76, both hemispheres 55.0
2245 Female, age 91, both hemispheres 54.9
1850 Male, age 80, both hemispheres 53.9
1933 Female, age 85, both hemispheres 51.7
2622 Female, age 67, right hemisphere 49.6
1990 Female, age 91, right hemisphere 49.3
2250 Female, age 67, right hemisphere 47.4
2692 Male, age 74, both hemispheres 46.1
2693 Female, age 94, both hemispheres 44.9
Perirhinal gyrus
nTPM: 51.1
1794 Male, age 80, right hemisphere 56.4
1841 Female, age 85, right hemisphere 52.9
2848 Male, age 76, right hemisphere 49.9
1847 Female, age 91, left hemisphere 48.8
2521 Female, age 94, right hemisphere 47.3
Subiculum
nTPM: 48.7
1901 Male, age 80, both hemispheres 52.0
2042 Male, age 76, both hemispheres 51.2
2438 Female, age 94, left hemisphere 48.9
1977 Female, age 85, both hemispheres 48.3
2729 Female, age 91, right hemisphere 47.1
2619 Male, age 74, both hemispheres 44.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.2
Samples: 197

Max nTPM: 72.3
Min nTPM: 18.4
Std nTPM: 6.3
Median nTPM: 28.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 72.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 48.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 47.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 44.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 43.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 43.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 42.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 42.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 41.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 40.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 40.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 55.8
FF:10153-102I9 76 years, female 73.3
FF:10169-103B7 60 years, female 38.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Subiculum
nTPM: 21.0
Samples: 4

Max nTPM: 26.7
Min nTPM: 17.7
Sample A Female 26.7
Sample B Female 19.6
Sample C Male 19.8
Sample D Male 17.7
Dorsal hippocampus
nTPM: 21.2
Samples: 4

Max nTPM: 26.1
Min nTPM: 15.7
Sample A Female 26.1
Sample B Female 21.5
Sample C Male 21.5
Sample D Male 15.7
Entorhinal cortex
nTPM: 22.6
Samples: 4

Max nTPM: 23.6
Min nTPM: 21.4
Sample A Female 23.6
Sample B Female 22.3
Sample C Male 23.0
Sample D Male 21.4
Ventral hippocampus
nTPM: 22.1
Samples: 4

Max nTPM: 26.2
Min nTPM: 16.8
Sample A Female 22.0
Sample B Female 16.8
Sample C Male 26.2
Sample D Male 23.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 36.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 36.9
Samples: 4

Max nTPM: 40.4
Min nTPM: 35.3
Sample A Male 35.7
Sample B Male 40.4
Sample C Female 35.3
Sample D Female 36.3
Hippocampal formation
nTPM: 31.9
Samples: 4

Max nTPM: 32.3
Min nTPM: 30.8
Sample A Male 30.8
Sample B Male 32.2
Sample C Female 32.1
Sample D Female 32.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
76081027 Antisense, RP_060608_03_D02, Mouse strain C57BL/6J (56 days, male) 1.3

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