MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.4 nTPM
HPA Brain:156.4 nTPM
GTEx:61.4 nTPM
FANTOM5:386.1 Scaled Tags Per Million
Pig:147.5 nTPM
Mouse:169.4 nTPM
Allen mouse:15.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 156.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 135.0
2411 Female, age 72, unknown 151.7
1870 Female, age 42, unknown 150.4
2019 Male, age 18, unknown 145.9
1827 Male, age 72, unknown 135.5
2666 Male, age 74, left hemisphere 133.4
1833 Male, age 53, unknown 132.8
1830 Male, age 51, unknown 132.3
2219 Male, age 76, both hemispheres 131.4
2828 Female, age 72, unknown 118.5
2586 Male, age 75, left hemisphere 117.8
Dorsal raphe nucleus
nTPM: 140.9
2750 Male, age 76, both hemispheres 162.5
2298 Female, age 72, unknown 140.9
2047 Male, age 72, unknown 139.4
1828 Male, age 53, unknown 139.1
2016 Female, age 72, unknown 122.6
Inferior colliculus
nTPM: 123.4
2097 Female, age 72, unknown 136.8
1890 Male, age 53, unknown 124.2
1848 Female, age 42, unknown 123.5
2849 Male, age 72, unknown 109.2
Median raphe nucleus
nTPM: 154.0
2220 Male, age 76, midline 154.0
Periaquaductal grey, anterior
nTPM: 134.1
1947 Male, age 18, unknown 147.1
2502 Female, age 75, unknown 131.6
1795 Male, age 51, unknown 123.7
Periaquaductal grey, dorsal
nTPM: 115.0
1831 Male, age 72, unknown 124.7
2464 Female, age 72, unknown 124.3
2850 Male, age 76, both hemispheres 105.7
1840 Male, age 53, unknown 105.3
Periaquaductal grey, lateral
nTPM: 121.7
2272 Male, age 74, both hemispheres 137.9
2053 Male, age 18, unknown 122.8
2140 Male, age 76, both hemispheres 104.5
Pretectal area
nTPM: 138.4
1816 Male, age 51, unknown 150.2
2007 Male, age 72, unknown 147.7
2273 Male, age 74, both hemispheres 145.7
1815 Male, age 53, unknown 144.7
1944 Female, age 72, unknown 144.0
1817 Female, age 42, unknown 143.0
2224 Female, age 72, unknown 143.0
2667 Female, age 75, unknown 135.1
2825 Male, age 18, unknown 124.8
2407 Male, age 75, both hemispheres 122.1
2316 Male, age 76, right hemisphere 121.9
Red nucleus
nTPM: 133.7
1821 Female, age 72, unknown 154.9
2725 Female, age 75, unknown 144.1
2823 Male, age 76, right hemisphere 139.1
1865 Male, age 51, unknown 136.1
2503 Female, age 72, unknown 136.0
1954 Female, age 42, unknown 135.9
1904 Male, age 53, unknown 132.8
2785 Male, age 18, unknown 130.7
2588 Male, age 74, left hemisphere 125.6
2227 Male, age 72, unknown 124.9
2584 Male, age 75, left hemisphere 124.0
2769 Male, age 72, unknown 120.7
Substantia nigra
nTPM: 156.4
2241 Male, age 72, unknown 196.4
1916 Female, age 42, unknown 182.9
1941 Male, age 53, unknown 174.5
2409 Female, age 72, unknown 169.8
1851 Male, age 51, unknown 166.1
1889 Female, age 72, unknown 150.5
2590 Female, age 75, unknown 139.2
2583 Male, age 75, right hemisphere 134.7
2699 Male, age 18, unknown 133.7
2665 Male, age 74, both hemispheres 115.9
Superior colliculus
nTPM: 127.5
2261 Male, age 18, unknown 136.8
2668 Female, age 75, unknown 135.7
2587 Male, age 74, left hemisphere 135.5
1895 Male, age 76, right hemisphere 134.1
1913 Female, age 42, unknown 133.0
2087 Female, age 72, unknown 130.3
1796 Male, age 53, unknown 126.0
1839 Male, age 51, unknown 125.3
1995 Male, age 72, unknown 114.1
2664 Male, age 75, both hemispheres 104.6
Ventral tegmental area
nTPM: 148.7
1915 Female, age 42, unknown 157.1
2218 Male, age 76, both hemispheres 156.6
2410 Female, age 72, unknown 150.3
2223 Female, age 72, unknown 149.4
2021 Male, age 53, unknown 140.1
1942 Male, age 51, unknown 138.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.4
Samples: 139

Max nTPM: 125.9
Min nTPM: 27.5
Std nTPM: 16.7
Median nTPM: 59.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 125.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 107.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 106.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 105.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 101.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 94.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 93.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 92.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 92.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 90.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 85.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 386.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 386.1
FF:10158-103A5 76 years, female 386.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 147.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.2
Samples: 4

Max nTPM: 153.4
Min nTPM: 99.7
Sample A Female 153.4
Sample B Female 99.7
Sample C Male 131.2
Sample D Male 116.6
Midbrain
nTPM: 147.6
Samples: 4

Max nTPM: 176.9
Min nTPM: 127.5
Sample A Female 176.9
Sample B Female 130.0
Sample C Male 155.8
Sample D Male 127.5
Periaqueductal gray
nTPM: 109.9
Samples: 3

Max nTPM: 112.8
Min nTPM: 107.3
Sample B Female 112.8
Sample C Male 109.7
Sample D Male 107.3
Superior colliculi
nTPM: 137.5
Samples: 4

Max nTPM: 179.3
Min nTPM: 84.8
Sample A Female 135.5
Sample B Female 84.8
Sample C Male 179.3
Sample D Male 150.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 169.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.4
Samples: 4

Max nTPM: 177.4
Min nTPM: 158.6
Sample A Male 158.6
Sample B Male 171.2
Sample C Female 177.4
Sample D Female 170.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.9
73817983 Antisense, RP_051214_01_A08, Mouse strain C57BL/6J (56 days, male) 19.8
634466 Antisense, RP_040914_01_B05, Mouse strain C57BL/6J (56 days, male) 11.9

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