MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA Brain:94.8 nTPM
GTEx:14.1 nTPM
FANTOM5:49.7 Scaled Tags Per Million
Pig:129.9 nTPM
Mouse:52.6 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 94.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.5
2019 Male, age 18, unknown 86.8
1827 Male, age 72, unknown 86.4
2586 Male, age 75, left hemisphere 78.7
2411 Female, age 72, unknown 78.0
1870 Female, age 42, unknown 74.3
1833 Male, age 53, unknown 69.3
2666 Male, age 74, left hemisphere 68.2
1830 Male, age 51, unknown 65.6
2219 Male, age 76, both hemispheres 65.4
2828 Female, age 72, unknown 62.5
Dorsal raphe nucleus
nTPM: 66.2
2298 Female, age 72, unknown 73.6
2750 Male, age 76, both hemispheres 71.0
1828 Male, age 53, unknown 64.6
2047 Male, age 72, unknown 62.8
2016 Female, age 72, unknown 59.1
Inferior colliculus
nTPM: 69.4
2097 Female, age 72, unknown 83.4
1890 Male, age 53, unknown 66.9
1848 Female, age 42, unknown 66.4
2849 Male, age 72, unknown 60.8
Median raphe nucleus
nTPM: 68.2
2220 Male, age 76, midline 68.2
Periaquaductal grey, anterior
nTPM: 77.7
2502 Female, age 75, unknown 81.9
1795 Male, age 51, unknown 76.5
1947 Male, age 18, unknown 74.8
Periaquaductal grey, dorsal
nTPM: 71.4
1831 Male, age 72, unknown 79.9
1840 Male, age 53, unknown 75.4
2464 Female, age 72, unknown 68.4
2850 Male, age 76, both hemispheres 61.8
Periaquaductal grey, lateral
nTPM: 66.1
2053 Male, age 18, unknown 71.1
2272 Male, age 74, both hemispheres 67.3
2140 Male, age 76, both hemispheres 59.9
Pretectal area
nTPM: 94.8
1816 Male, age 51, unknown 141.9
1944 Female, age 72, unknown 125.3
2007 Male, age 72, unknown 122.3
1817 Female, age 42, unknown 113.0
1815 Male, age 53, unknown 107.0
2273 Male, age 74, both hemispheres 81.4
2667 Female, age 75, unknown 78.8
2224 Female, age 72, unknown 76.9
2407 Male, age 75, both hemispheres 73.3
2825 Male, age 18, unknown 65.6
2316 Male, age 76, right hemisphere 56.8
Red nucleus
nTPM: 67.2
2785 Male, age 18, unknown 81.9
2584 Male, age 75, left hemisphere 78.3
2588 Male, age 74, left hemisphere 73.8
1821 Female, age 72, unknown 73.5
2503 Female, age 72, unknown 70.9
2725 Female, age 75, unknown 68.8
1865 Male, age 51, unknown 61.9
1904 Male, age 53, unknown 61.7
1954 Female, age 42, unknown 60.9
2823 Male, age 76, right hemisphere 59.6
2227 Male, age 72, unknown 57.5
2769 Male, age 72, unknown 57.2
Substantia nigra
nTPM: 74.9
1889 Female, age 72, unknown 98.6
2583 Male, age 75, right hemisphere 81.6
1941 Male, age 53, unknown 77.8
2590 Female, age 75, unknown 76.7
1916 Female, age 42, unknown 74.7
2241 Male, age 72, unknown 73.6
2665 Male, age 74, both hemispheres 73.0
1851 Male, age 51, unknown 70.7
2409 Female, age 72, unknown 67.8
2699 Male, age 18, unknown 54.0
Superior colliculus
nTPM: 81.2
2087 Female, age 72, unknown 103.1
2261 Male, age 18, unknown 101.1
1913 Female, age 42, unknown 83.4
2668 Female, age 75, unknown 82.5
1796 Male, age 53, unknown 80.7
2587 Male, age 74, left hemisphere 76.6
2664 Male, age 75, both hemispheres 76.4
1995 Male, age 72, unknown 72.9
1839 Male, age 51, unknown 68.1
1895 Male, age 76, right hemisphere 67.6
Ventral tegmental area
nTPM: 70.0
2410 Female, age 72, unknown 78.5
2223 Female, age 72, unknown 77.4
2218 Male, age 76, both hemispheres 68.6
1942 Male, age 51, unknown 67.4
1915 Female, age 42, unknown 64.6
2021 Male, age 53, unknown 63.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 23.3
Min nTPM: 6.5
Std nTPM: 3.7
Median nTPM: 13.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 23.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 23.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 22.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 21.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 21.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 21.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 21.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 21.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 20.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.7
FF:10158-103A5 76 years, female 49.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 129.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.0
Samples: 4

Max nTPM: 114.2
Min nTPM: 65.2
Sample A Female 101.9
Sample B Female 74.7
Sample C Male 114.2
Sample D Male 65.2
Midbrain
nTPM: 129.9
Samples: 4

Max nTPM: 202.4
Min nTPM: 73.5
Sample A Female 73.5
Sample B Female 88.2
Sample C Male 202.4
Sample D Male 155.3
Periaqueductal gray
nTPM: 85.2
Samples: 3

Max nTPM: 97.7
Min nTPM: 75.1
Sample B Female 82.9
Sample C Male 97.7
Sample D Male 75.1
Superior colliculi
nTPM: 126.0
Samples: 4

Max nTPM: 165.8
Min nTPM: 84.6
Sample A Female 117.5
Sample B Female 84.6
Sample C Male 165.8
Sample D Male 136.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 52.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.6
Samples: 4

Max nTPM: 57.0
Min nTPM: 42.7
Sample A Male 42.7
Sample B Male 55.8
Sample C Female 57.0
Sample D Female 54.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
69526516 Antisense, RP_050421_01_A04, Mouse strain C57BL/6J (56 days, male) 7.3

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