We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
VCL
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Cluster
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • VCL
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:54.5 nTPM
GTEx:54.5 nTPM
FANTOM5:211.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002131Antibody CAB002453
Squamous epithelial cells MediumLow




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 54.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 54.5
Samples: 156

Max nTPM: 182.6
Min nTPM: 22.2
Std nTPM: 30.6
Median nTPM: 44.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 182.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 151.6
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 145.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 144.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 140.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 129.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 127.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 127.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 120.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 120.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 118.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 117.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 115.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 115.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 110.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 105.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 100.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 99.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 91.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 89.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 85.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 83.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 83.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 81.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 76.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 75.2
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 75.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 74.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 73.7
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 71.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 70.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 70.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 70.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 69.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 67.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 67.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 65.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 65.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 63.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 62.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 62.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 62.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 60.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 59.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 58.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 57.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 57.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 57.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 57.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 55.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 55.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 52.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 52.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 52.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 51.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 51.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 50.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 49.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 49.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 48.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 48.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 48.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 48.5
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 48.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 47.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 47.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 47.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 46.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 46.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 45.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 45.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 45.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 45.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 45.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 45.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 45.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 44.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 44.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 44.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 43.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 43.3
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 42.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 42.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 41.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 41.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 41.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 41.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 41.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 41.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 41.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 41.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 41.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 40.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 40.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 40.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 40.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 39.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 39.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 39.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 38.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 38.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 38.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 38.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 37.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 37.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 37.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 36.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 36.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 36.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 36.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 36.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 36.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 35.9
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 35.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 35.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 34.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 34.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 34.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 33.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 33.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 33.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 33.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 33.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 32.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 32.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 31.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 31.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 31.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 31.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 31.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 31.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 31.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 31.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 30.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 30.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 29.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 29.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 29.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 29.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 29.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 28.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 28.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 27.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 27.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 26.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 26.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 25.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 25.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 24.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 24.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 23.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 23.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 23.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 23.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 23.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 22.2
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 211.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 211.3
FF:10204-103F6 68 years, female 211.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org