MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.1 nTPM
HPA Brain:30.3 nTPM
GTEx:20.1 nTPM
FANTOM5:128.5 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:46.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.4
2019 Male, age 18, unknown 37.4
1870 Female, age 42, unknown 32.7
2411 Female, age 72, unknown 32.5
1833 Male, age 53, unknown 30.3
1830 Male, age 51, unknown 29.7
1827 Male, age 72, unknown 26.3
2586 Male, age 75, left hemisphere 25.1
2666 Male, age 74, left hemisphere 24.7
2219 Male, age 76, both hemispheres 23.6
2828 Female, age 72, unknown 22.0
Dorsal raphe nucleus
nTPM: 27.6
2750 Male, age 76, both hemispheres 29.7
1828 Male, age 53, unknown 29.6
2016 Female, age 72, unknown 26.7
2298 Female, age 72, unknown 26.7
2047 Male, age 72, unknown 25.1
Inferior colliculus
nTPM: 27.5
2097 Female, age 72, unknown 29.5
1890 Male, age 53, unknown 27.7
2849 Male, age 72, unknown 26.5
1848 Female, age 42, unknown 26.4
Median raphe nucleus
nTPM: 26.6
2220 Male, age 76, midline 26.6
Periaquaductal grey, anterior
nTPM: 26.4
2502 Female, age 75, unknown 31.3
1947 Male, age 18, unknown 25.8
1795 Male, age 51, unknown 22.1
Periaquaductal grey, dorsal
nTPM: 26.3
2850 Male, age 76, both hemispheres 30.9
2464 Female, age 72, unknown 27.1
1840 Male, age 53, unknown 24.0
1831 Male, age 72, unknown 23.1
Periaquaductal grey, lateral
nTPM: 24.9
2272 Male, age 74, both hemispheres 26.8
2140 Male, age 76, both hemispheres 25.9
2053 Male, age 18, unknown 21.9
Pretectal area
nTPM: 27.7
2007 Male, age 72, unknown 34.8
1817 Female, age 42, unknown 31.5
1944 Female, age 72, unknown 30.1
1815 Male, age 53, unknown 29.9
1816 Male, age 51, unknown 29.0
2273 Male, age 74, both hemispheres 28.5
2224 Female, age 72, unknown 25.8
2316 Male, age 76, right hemisphere 25.3
2825 Male, age 18, unknown 25.2
2667 Female, age 75, unknown 23.0
2407 Male, age 75, both hemispheres 21.9
Red nucleus
nTPM: 30.3
1821 Female, age 72, unknown 35.5
2785 Male, age 18, unknown 35.0
1865 Male, age 51, unknown 32.7
2503 Female, age 72, unknown 32.0
2823 Male, age 76, right hemisphere 31.1
1904 Male, age 53, unknown 30.3
1954 Female, age 42, unknown 30.2
2227 Male, age 72, unknown 29.5
2769 Male, age 72, unknown 29.3
2588 Male, age 74, left hemisphere 27.3
2725 Female, age 75, unknown 26.3
2584 Male, age 75, left hemisphere 24.7
Substantia nigra
nTPM: 27.6
1889 Female, age 72, unknown 32.5
2241 Male, age 72, unknown 30.9
1941 Male, age 53, unknown 30.6
2583 Male, age 75, right hemisphere 28.4
1851 Male, age 51, unknown 27.6
2590 Female, age 75, unknown 27.5
2409 Female, age 72, unknown 26.7
1916 Female, age 42, unknown 24.6
2699 Male, age 18, unknown 24.0
2665 Male, age 74, both hemispheres 23.2
Superior colliculus
nTPM: 27.0
2587 Male, age 74, left hemisphere 30.7
2668 Female, age 75, unknown 30.6
1895 Male, age 76, right hemisphere 30.5
1913 Female, age 42, unknown 29.9
1995 Male, age 72, unknown 27.0
1839 Male, age 51, unknown 26.5
2087 Female, age 72, unknown 24.8
2261 Male, age 18, unknown 24.7
1796 Male, age 53, unknown 22.8
2664 Male, age 75, both hemispheres 22.4
Ventral tegmental area
nTPM: 26.2
2223 Female, age 72, unknown 29.8
2410 Female, age 72, unknown 27.9
1915 Female, age 42, unknown 25.9
1942 Male, age 51, unknown 25.6
2218 Male, age 76, both hemispheres 24.6
2021 Male, age 53, unknown 23.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.1
Samples: 139

Max nTPM: 44.8
Min nTPM: 10.5
Std nTPM: 5.0
Median nTPM: 19.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 44.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 35.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 31.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 30.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 29.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 28.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 28.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 28.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 27.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 27.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.5
FF:10158-103A5 76 years, female 128.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.2
Samples: 4

Max nTPM: 13.7
Min nTPM: 8.2
Sample A Female 13.7
Sample B Female 9.2
Sample C Male 13.7
Sample D Male 8.2
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 10.5
Sample C Male 10.6
Sample D Male 11.5
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 14.1
Min nTPM: 10.3
Sample B Female 10.3
Sample C Male 14.1
Sample D Male 11.2
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 11.9
Min nTPM: 7.7
Sample A Female 11.0
Sample B Female 7.7
Sample C Male 11.9
Sample D Male 10.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.1
Samples: 4

Max nTPM: 48.0
Min nTPM: 43.7
Sample A Male 45.4
Sample B Male 47.3
Sample C Female 48.0
Sample D Female 43.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
76003369 Antisense, RP_060608_02_C08, Mouse strain C57BL/6J (56 days, male) 0.3

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