MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.2 nTPM
HPA Brain:22.2 nTPM
GTEx:32.2 nTPM
FANTOM5:8.9 Scaled Tags Per Million
Pig:60.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.2
2019 Male, age 18, unknown 20.2
1827 Male, age 72, unknown 20.1
2666 Male, age 74, left hemisphere 19.4
1870 Female, age 42, unknown 19.0
2828 Female, age 72, unknown 18.3
2411 Female, age 72, unknown 18.0
2586 Male, age 75, left hemisphere 17.9
1833 Male, age 53, unknown 17.7
2219 Male, age 76, both hemispheres 17.2
1830 Male, age 51, unknown 14.6
Dorsal raphe nucleus
nTPM: 18.8
2298 Female, age 72, unknown 20.9
1828 Male, age 53, unknown 19.9
2047 Male, age 72, unknown 18.8
2016 Female, age 72, unknown 17.5
2750 Male, age 76, both hemispheres 17.1
Inferior colliculus
nTPM: 18.0
1890 Male, age 53, unknown 18.4
2097 Female, age 72, unknown 18.1
2849 Male, age 72, unknown 18.0
1848 Female, age 42, unknown 17.6
Median raphe nucleus
nTPM: 19.1
2220 Male, age 76, midline 19.1
Periaquaductal grey, anterior
nTPM: 17.4
2502 Female, age 75, unknown 18.3
1795 Male, age 51, unknown 18.1
1947 Male, age 18, unknown 15.9
Periaquaductal grey, dorsal
nTPM: 18.3
2850 Male, age 76, both hemispheres 19.7
2464 Female, age 72, unknown 19.1
1831 Male, age 72, unknown 17.3
1840 Male, age 53, unknown 17.1
Periaquaductal grey, lateral
nTPM: 20.9
2272 Male, age 74, both hemispheres 27.9
2140 Male, age 76, both hemispheres 17.8
2053 Male, age 18, unknown 17.0
Pretectal area
nTPM: 22.2
2007 Male, age 72, unknown 27.2
1944 Female, age 72, unknown 25.5
1817 Female, age 42, unknown 24.6
1816 Male, age 51, unknown 24.5
1815 Male, age 53, unknown 22.5
2273 Male, age 74, both hemispheres 21.7
2224 Female, age 72, unknown 21.6
2667 Female, age 75, unknown 21.5
2407 Male, age 75, both hemispheres 19.9
2825 Male, age 18, unknown 18.5
2316 Male, age 76, right hemisphere 16.8
Red nucleus
nTPM: 16.8
1821 Female, age 72, unknown 21.0
2725 Female, age 75, unknown 19.1
2785 Male, age 18, unknown 19.0
1865 Male, age 51, unknown 18.7
2823 Male, age 76, right hemisphere 18.7
2227 Male, age 72, unknown 16.1
2588 Male, age 74, left hemisphere 15.9
2769 Male, age 72, unknown 15.8
1904 Male, age 53, unknown 15.3
1954 Female, age 42, unknown 15.2
2584 Male, age 75, left hemisphere 14.2
2503 Female, age 72, unknown 12.6
Substantia nigra
nTPM: 20.1
1916 Female, age 42, unknown 28.4
1941 Male, age 53, unknown 23.1
1889 Female, age 72, unknown 21.5
2665 Male, age 74, both hemispheres 21.2
1851 Male, age 51, unknown 20.6
2699 Male, age 18, unknown 20.4
2241 Male, age 72, unknown 18.7
2583 Male, age 75, right hemisphere 16.7
2409 Female, age 72, unknown 15.2
2590 Female, age 75, unknown 15.2
Superior colliculus
nTPM: 18.6
2587 Male, age 74, left hemisphere 22.5
2261 Male, age 18, unknown 21.9
2668 Female, age 75, unknown 20.3
2087 Female, age 72, unknown 20.1
1895 Male, age 76, right hemisphere 19.9
1796 Male, age 53, unknown 18.5
1913 Female, age 42, unknown 16.8
1839 Male, age 51, unknown 16.7
1995 Male, age 72, unknown 16.3
2664 Male, age 75, both hemispheres 13.2
Ventral tegmental area
nTPM: 18.3
2410 Female, age 72, unknown 20.7
2218 Male, age 76, both hemispheres 20.4
1915 Female, age 42, unknown 18.5
1942 Male, age 51, unknown 18.4
2021 Male, age 53, unknown 16.7
2223 Female, age 72, unknown 15.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.2
Samples: 139

Max nTPM: 52.4
Min nTPM: 15.8
Std nTPM: 6.8
Median nTPM: 30.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 50.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 50.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 49.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 48.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 44.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 44.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 44.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 44.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 43.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 43.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.9
FF:10158-103A5 76 years, female 8.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.9
Samples: 4

Max nTPM: 84.0
Min nTPM: 40.4
Sample A Female 84.0
Sample B Female 54.5
Sample C Male 52.5
Sample D Male 40.4
Midbrain
nTPM: 57.1
Samples: 4

Max nTPM: 73.9
Min nTPM: 51.2
Sample A Female 73.9
Sample B Female 51.2
Sample C Male 51.9
Sample D Male 51.4
Periaqueductal gray
nTPM: 49.7
Samples: 3

Max nTPM: 55.1
Min nTPM: 44.1
Sample B Female 44.1
Sample C Male 55.1
Sample D Male 49.9
Superior colliculi
nTPM: 60.6
Samples: 4

Max nTPM: 71.5
Min nTPM: 49.5
Sample A Female 71.5
Sample B Female 58.4
Sample C Male 62.8
Sample D Male 49.5

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