MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:44.8 nTPM
GTEx:16.6 nTPM
FANTOM5:90.9 Scaled Tags Per Million
Pig:171.5 nTPM
Mouse:6.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.0
2219 Male, age 76, both hemispheres 48.5
1870 Female, age 42, unknown 46.3
2828 Female, age 72, unknown 45.8
2019 Male, age 18, unknown 38.2
1830 Male, age 51, unknown 37.3
1833 Male, age 53, unknown 36.1
1827 Male, age 72, unknown 34.9
2411 Female, age 72, unknown 32.7
2586 Male, age 75, left hemisphere 20.3
2666 Male, age 74, left hemisphere 20.1
Dorsal raphe nucleus
nTPM: 39.2
2016 Female, age 72, unknown 52.9
2298 Female, age 72, unknown 41.4
2750 Male, age 76, both hemispheres 38.3
2047 Male, age 72, unknown 31.9
1828 Male, age 53, unknown 31.6
Inferior colliculus
nTPM: 32.2
1848 Female, age 42, unknown 34.9
1890 Male, age 53, unknown 31.9
2849 Male, age 72, unknown 31.3
2097 Female, age 72, unknown 30.6
Median raphe nucleus
nTPM: 38.7
2220 Male, age 76, midline 38.7
Periaquaductal grey, anterior
nTPM: 41.9
2502 Female, age 75, unknown 59.3
1795 Male, age 51, unknown 34.9
1947 Male, age 18, unknown 31.6
Periaquaductal grey, dorsal
nTPM: 41.8
2850 Male, age 76, both hemispheres 54.7
1831 Male, age 72, unknown 41.3
1840 Male, age 53, unknown 40.4
2464 Female, age 72, unknown 30.9
Periaquaductal grey, lateral
nTPM: 41.5
2140 Male, age 76, both hemispheres 49.2
2053 Male, age 18, unknown 38.5
2272 Male, age 74, both hemispheres 36.9
Pretectal area
nTPM: 38.5
2316 Male, age 76, right hemisphere 50.9
2667 Female, age 75, unknown 47.9
2273 Male, age 74, both hemispheres 47.7
2224 Female, age 72, unknown 46.5
1815 Male, age 53, unknown 40.1
2407 Male, age 75, both hemispheres 39.4
1817 Female, age 42, unknown 34.2
1944 Female, age 72, unknown 32.4
2825 Male, age 18, unknown 31.7
2007 Male, age 72, unknown 28.2
1816 Male, age 51, unknown 24.3
Red nucleus
nTPM: 40.2
2503 Female, age 72, unknown 47.8
1954 Female, age 42, unknown 47.2
2227 Male, age 72, unknown 45.0
1865 Male, age 51, unknown 44.4
2769 Male, age 72, unknown 43.3
2588 Male, age 74, left hemisphere 42.8
2785 Male, age 18, unknown 40.4
1821 Female, age 72, unknown 40.3
1904 Male, age 53, unknown 39.4
2823 Male, age 76, right hemisphere 36.3
2584 Male, age 75, left hemisphere 31.8
2725 Female, age 75, unknown 24.0
Substantia nigra
nTPM: 43.5
2699 Male, age 18, unknown 84.0
2590 Female, age 75, unknown 50.9
1851 Male, age 51, unknown 48.0
2665 Male, age 74, both hemispheres 45.4
2409 Female, age 72, unknown 42.3
1941 Male, age 53, unknown 35.2
2241 Male, age 72, unknown 34.6
1916 Female, age 42, unknown 32.4
2583 Male, age 75, right hemisphere 31.8
1889 Female, age 72, unknown 30.7
Superior colliculus
nTPM: 38.3
1913 Female, age 42, unknown 62.6
1995 Male, age 72, unknown 57.6
1839 Male, age 51, unknown 39.8
1796 Male, age 53, unknown 39.4
2587 Male, age 74, left hemisphere 36.8
2664 Male, age 75, both hemispheres 33.8
2087 Female, age 72, unknown 33.4
1895 Male, age 76, right hemisphere 27.6
2668 Female, age 75, unknown 26.1
2261 Male, age 18, unknown 25.9
Ventral tegmental area
nTPM: 44.8
2021 Male, age 53, unknown 54.7
1942 Male, age 51, unknown 52.0
2223 Female, age 72, unknown 43.0
2218 Male, age 76, both hemispheres 42.0
1915 Female, age 42, unknown 41.1
2410 Female, age 72, unknown 35.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.6
Samples: 139

Max nTPM: 48.7
Min nTPM: 3.9
Std nTPM: 7.7
Median nTPM: 16.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 48.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 46.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 38.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 34.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 32.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 31.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 30.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 29.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 29.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 28.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 90.9
FF:10158-103A5 76 years, female 90.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 171.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 159.0
Samples: 4

Max nTPM: 199.1
Min nTPM: 130.1
Sample A Female 160.7
Sample B Female 130.1
Sample C Male 146.2
Sample D Male 199.1
Midbrain
nTPM: 171.5
Samples: 4

Max nTPM: 386.4
Min nTPM: 68.3
Sample A Female 386.4
Sample B Female 122.8
Sample C Male 108.3
Sample D Male 68.3
Periaqueductal gray
nTPM: 110.1
Samples: 3

Max nTPM: 124.8
Min nTPM: 102.1
Sample B Female 103.3
Sample C Male 124.8
Sample D Male 102.1
Superior colliculi
nTPM: 115.4
Samples: 4

Max nTPM: 149.7
Min nTPM: 80.8
Sample A Female 118.3
Sample B Female 80.8
Sample C Male 149.7
Sample D Male 112.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.1
Sample A Male 5.1
Sample B Male 5.9
Sample C Female 7.0
Sample D Female 6.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73520975 Antisense, RP_051017_04_F03, Mouse strain C57BL/6J (56 days, male) 0.0

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