HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:32.1 nTPM
HPA Brain:119.8 nTPM
GTEx:32.1 nTPM
FANTOM5:46.2 Scaled Tags Per Million
Pig:24.5 nTPM
Mouse:36.5 nTPM
Allen mouse:12.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005923
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 119.8
Sample id Sample description nTPM
Hippocampus
nTPM: 109.2
2148 Female, age 91, left hemisphere 130.1
2621 Female, age 67, right hemisphere 117.9
2529 Female, age 94, left hemisphere 113.6
1911 Female, age 85, right hemisphere 108.1
1898 Male, age 80, left hemisphere 92.9
1855 Male, age 76, left hemisphere 92.7
Dentate gyrus
nTPM: 115.3
2531 Female, age 67, both hemispheres 153.9
1927 Female, age 91, both hemispheres 118.9
2530 Female, age 94, left hemisphere 110.2
2528 Male, age 74, both hemispheres 106.3
2246 Female, age 85, both hemispheres 101.4
2010 Male, age 76, both hemispheres 101.2
Entorhinal gyrus
nTPM: 111.4
2613 Female, age 94, left hemisphere 132.3
2686 Male, age 75, right hemisphere 122.7
2764 Male, age 80, right hemisphere 120.4
1787 Male, age 76, left hemisphere 111.4
1938 Female, age 85, left hemisphere 96.0
2117 Female, age 91, right hemisphere 85.5
Hippocampus, CA1
nTPM: 108.5
2082 Female, age 91, right hemisphere 115.9
2527 Male, age 74, both hemispheres 115.3
2045 Male, age 76, both hemispheres 109.7
2749 Male, age 80, left hemisphere 107.6
1873 Female, age 85, both hemispheres 94.0
Hippocampus, CA2
nTPM: 97.8
2113 Female, age 91, right hemisphere 108.8
2437 Female, age 94, left hemisphere 103.5
1892 Male, age 76, both hemispheres 98.2
1963 Male, age 80, left hemisphere 96.1
2249 Male, age 74, both hemispheres 93.0
1940 Female, age 85, left hemisphere 87.0
Hippocampus, CA3
nTPM: 119.8
2861 Female, age 67, both hemispheres 160.1
2620 Female, age 94, left hemisphere 148.1
2137 Male, age 80, left hemisphere 129.2
1867 Male, age 76, both hemispheres 98.9
2436 Male, age 74, both hemispheres 94.2
1891 Female, age 85, both hemispheres 88.1
Parahippocampal cortex
nTPM: 105.6
2622 Female, age 67, right hemisphere 122.2
2245 Female, age 91, both hemispheres 118.7
2532 Female, age 72, left hemisphere 108.8
2018 Male, age 76, both hemispheres 106.1
2693 Female, age 94, both hemispheres 105.1
2692 Male, age 74, both hemispheres 102.3
1990 Female, age 91, right hemisphere 101.2
1933 Female, age 85, both hemispheres 100.6
2250 Female, age 67, right hemisphere 96.7
1850 Male, age 80, both hemispheres 94.4
Perirhinal gyrus
nTPM: 96.3
1847 Female, age 91, left hemisphere 102.5
1794 Male, age 80, right hemisphere 99.0
2848 Male, age 76, right hemisphere 98.2
2521 Female, age 94, right hemisphere 91.7
1841 Female, age 85, right hemisphere 90.0
Subiculum
nTPM: 95.8
2729 Female, age 91, right hemisphere 109.3
2619 Male, age 74, both hemispheres 99.9
1977 Female, age 85, both hemispheres 96.4
2042 Male, age 76, both hemispheres 92.9
1901 Male, age 80, both hemispheres 89.3
2438 Female, age 94, left hemisphere 86.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.1
Samples: 197

Max nTPM: 69.7
Min nTPM: 11.2
Std nTPM: 10.9
Median nTPM: 31.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 69.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 61.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 57.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 56.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 56.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 54.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 53.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 51.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 51.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 50.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 50.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 46.2
FF:10153-102I9 76 years, female 54.1
FF:10169-103B7 60 years, female 38.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.5
Pig sample Sample description nTPM
Subiculum
nTPM: 24.1
Samples: 4

Max nTPM: 29.1
Min nTPM: 20.3
Sample A Female 29.1
Sample B Female 20.3
Sample C Male 25.4
Sample D Male 21.7
Dorsal hippocampus
nTPM: 22.9
Samples: 4

Max nTPM: 23.4
Min nTPM: 21.9
Sample A Female 23.4
Sample B Female 21.9
Sample C Male 23.2
Sample D Male 23.0
Entorhinal cortex
nTPM: 24.4
Samples: 4

Max nTPM: 27.3
Min nTPM: 19.3
Sample A Female 27.3
Sample B Female 19.3
Sample C Male 23.8
Sample D Male 27.3
Ventral hippocampus
nTPM: 24.5
Samples: 4

Max nTPM: 31.0
Min nTPM: 19.5
Sample A Female 22.9
Sample B Female 19.5
Sample C Male 31.0
Sample D Male 24.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 36.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.4
Samples: 4

Max nTPM: 36.2
Min nTPM: 28.3
Sample A Male 28.3
Sample B Male 29.2
Sample C Female 31.9
Sample D Female 36.2
Hippocampal formation
nTPM: 36.5
Samples: 4

Max nTPM: 41.0
Min nTPM: 30.6
Sample A Male 30.6
Sample B Male 38.9
Sample C Female 41.0
Sample D Female 35.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.6
378553 Antisense, RP_040625_01_B08, Mouse strain C57BL/6J (56 days, male) 14.6
75774668 Antisense, RP_060530_01_C05, Mouse strain C57BL/6J (56 days, male) 10.7

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