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SLC66A1
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  • SLC66A1
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC66A1
Synonyms FLJ20320, LAAT-1, LAAT1, PQLC2
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 66 member 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband p36.13
Chromosome location (bp) 19312326 - 19329300
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000040487 (version 109)
Entrez gene 54896
HGNC HGNC:26001
UniProt Q6ZP29 (UniProt - Evidence at protein level)
neXtProt NX_Q6ZP29
GeneCards SLC66A1
Antibodypedia SLC66A1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Amino acid transporter that specifically mediates the pH-dependent export of the cationic amino acids arginine, histidine and lysine from lysosomes.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Amino-acid transport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables L-arginine transmembrane transporter activity and L-lysine transmembrane transporter activity. Involved in L-arginine transmembrane transport; amino acid homeostasis; and lysine transport. Located in lysosomal membrane. Is integral component of organelle membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC66A1-201
ENSP00000364295
ENST00000375153
Q6ZP29
[Direct mapping] Lysosomal amino acid transporter 1 homolog
Show all
A0A024RAE3
[Target identity:100%; Query identity:100%] PQ loop repeat containing 2, isoform CRA_c
Show all
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0006865 [amino acid transport]
GO:0015174 [basic amino acid transmembrane transporter activity]
GO:0015189 [L-lysine transmembrane transporter activity]
GO:0015819 [lysine transport]
GO:0016020 [membrane]
GO:0031090 [organelle membrane]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0055085 [transmembrane transport]
GO:0061459 [L-arginine transmembrane transporter activity]
GO:0080144 [amino acid homeostasis]
GO:1903401 [L-lysine transmembrane transport]
GO:1903826 [L-arginine transmembrane transport]
GO:1990822 [basic amino acid transmembrane transport]
Show all
291 aa
31.9 kDa
No 6
SLC66A1-202
ENSP00000364297
ENST00000375155
Q6ZP29
[Direct mapping] Lysosomal amino acid transporter 1 homolog
Show all
A0A024RAE3
[Target identity:100%; Query identity:100%] PQ loop repeat containing 2, isoform CRA_c
Show all
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0006865 [amino acid transport]
GO:0015174 [basic amino acid transmembrane transporter activity]
GO:0015189 [L-lysine transmembrane transporter activity]
GO:0015819 [lysine transport]
GO:0016020 [membrane]
GO:0031090 [organelle membrane]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0055085 [transmembrane transport]
GO:0061459 [L-arginine transmembrane transporter activity]
GO:0080144 [amino acid homeostasis]
GO:1903401 [L-lysine transmembrane transport]
GO:1903826 [L-arginine transmembrane transport]
GO:1990822 [basic amino acid transmembrane transport]
Show all
291 aa
31.9 kDa
No 6
SLC66A1-203
ENSP00000383395
ENST00000400548
Q6ZP29
[Direct mapping] Lysosomal amino acid transporter 1 homolog
Show all
A0A024RAA1
[Target identity:100%; Query identity:100%] PQ loop repeat containing 2 isoform 1; PQ loop repeat containing 2, isoform CRA_b
Show all
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0006865 [amino acid transport]
GO:0015174 [basic amino acid transmembrane transporter activity]
GO:0015189 [L-lysine transmembrane transporter activity]
GO:0015819 [lysine transport]
GO:0016020 [membrane]
GO:0031090 [organelle membrane]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0055085 [transmembrane transport]
GO:0061459 [L-arginine transmembrane transporter activity]
GO:0080144 [amino acid homeostasis]
GO:1903401 [L-lysine transmembrane transport]
GO:1903826 [L-arginine transmembrane transport]
Show all
226 aa
24.8 kDa
No 5
SLC66A1-204
ENSP00000404701
ENST00000432465
A2A2E6
[Direct mapping] Lysosomal amino acid transporter 1 homolog
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Show all
GO:0016020 [membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
127 aa
13.9 kDa
No 3

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