MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:36.7 nTPM
GTEx:19.2 nTPM
FANTOM5:30.0 Scaled Tags Per Million
Pig:33.0 nTPM
Mouse:14.0 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.0
2019 Male, age 18, unknown 39.4
2828 Female, age 72, unknown 37.2
1870 Female, age 42, unknown 35.4
2411 Female, age 72, unknown 34.9
2586 Male, age 75, left hemisphere 33.8
1827 Male, age 72, unknown 33.2
1830 Male, age 51, unknown 32.4
1833 Male, age 53, unknown 32.0
2219 Male, age 76, both hemispheres 29.9
2666 Male, age 74, left hemisphere 22.1
Dorsal raphe nucleus
nTPM: 33.8
2298 Female, age 72, unknown 38.6
2016 Female, age 72, unknown 35.9
2750 Male, age 76, both hemispheres 33.0
1828 Male, age 53, unknown 32.7
2047 Male, age 72, unknown 29.0
Inferior colliculus
nTPM: 30.0
2097 Female, age 72, unknown 32.9
2849 Male, age 72, unknown 29.8
1848 Female, age 42, unknown 28.9
1890 Male, age 53, unknown 28.5
Median raphe nucleus
nTPM: 24.1
2220 Male, age 76, midline 24.1
Periaquaductal grey, anterior
nTPM: 33.8
2502 Female, age 75, unknown 40.5
1795 Male, age 51, unknown 31.0
1947 Male, age 18, unknown 29.8
Periaquaductal grey, dorsal
nTPM: 29.5
2464 Female, age 72, unknown 31.6
2850 Male, age 76, both hemispheres 29.8
1840 Male, age 53, unknown 29.3
1831 Male, age 72, unknown 27.4
Periaquaductal grey, lateral
nTPM: 30.6
2272 Male, age 74, both hemispheres 35.0
2053 Male, age 18, unknown 28.9
2140 Male, age 76, both hemispheres 27.8
Pretectal area
nTPM: 33.4
1815 Male, age 53, unknown 38.4
2273 Male, age 74, both hemispheres 38.4
1817 Female, age 42, unknown 35.9
2667 Female, age 75, unknown 35.7
2007 Male, age 72, unknown 33.8
1944 Female, age 72, unknown 33.2
2316 Male, age 76, right hemisphere 31.5
2224 Female, age 72, unknown 31.4
2407 Male, age 75, both hemispheres 30.2
1816 Male, age 51, unknown 30.1
2825 Male, age 18, unknown 29.1
Red nucleus
nTPM: 36.7
1821 Female, age 72, unknown 42.7
1865 Male, age 51, unknown 41.2
2503 Female, age 72, unknown 40.7
2785 Male, age 18, unknown 40.2
1904 Male, age 53, unknown 38.5
1954 Female, age 42, unknown 38.5
2227 Male, age 72, unknown 38.4
2769 Male, age 72, unknown 38.4
2823 Male, age 76, right hemisphere 36.5
2725 Female, age 75, unknown 30.9
2588 Male, age 74, left hemisphere 29.1
2584 Male, age 75, left hemisphere 25.8
Substantia nigra
nTPM: 31.1
1851 Male, age 51, unknown 35.4
1916 Female, age 42, unknown 34.7
1889 Female, age 72, unknown 31.9
2699 Male, age 18, unknown 31.4
2409 Female, age 72, unknown 31.2
2590 Female, age 75, unknown 30.8
1941 Male, age 53, unknown 30.7
2241 Male, age 72, unknown 30.0
2583 Male, age 75, right hemisphere 28.5
2665 Male, age 74, both hemispheres 26.6
Superior colliculus
nTPM: 32.2
1995 Male, age 72, unknown 36.3
2087 Female, age 72, unknown 34.2
2587 Male, age 74, left hemisphere 33.4
1913 Female, age 42, unknown 33.2
2261 Male, age 18, unknown 32.1
1839 Male, age 51, unknown 31.9
2664 Male, age 75, both hemispheres 31.7
1796 Male, age 53, unknown 31.0
1895 Male, age 76, right hemisphere 29.3
2668 Female, age 75, unknown 29.3
Ventral tegmental area
nTPM: 30.3
2410 Female, age 72, unknown 36.0
2223 Female, age 72, unknown 32.1
1915 Female, age 42, unknown 31.3
2021 Male, age 53, unknown 28.9
1942 Male, age 51, unknown 28.3
2218 Male, age 76, both hemispheres 25.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 139

Max nTPM: 44.3
Min nTPM: 5.5
Std nTPM: 6.1
Median nTPM: 18.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 44.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 39.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 37.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 32.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 32.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 31.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 31.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 29.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 28.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 27.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 27.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.0
FF:10158-103A5 76 years, female 30.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.2
Samples: 4

Max nTPM: 33.8
Min nTPM: 27.3
Sample A Female 31.3
Sample B Female 28.4
Sample C Male 33.8
Sample D Male 27.3
Midbrain
nTPM: 33.0
Samples: 4

Max nTPM: 38.9
Min nTPM: 24.9
Sample A Female 38.9
Sample B Female 33.7
Sample C Male 34.6
Sample D Male 24.9
Periaqueductal gray
nTPM: 32.3
Samples: 3

Max nTPM: 40.0
Min nTPM: 25.6
Sample B Female 40.0
Sample C Male 31.3
Sample D Male 25.6
Superior colliculi
nTPM: 32.1
Samples: 4

Max nTPM: 35.8
Min nTPM: 29.5
Sample A Female 31.5
Sample B Female 35.8
Sample C Male 31.5
Sample D Male 29.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.0
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.5
Sample A Male 15.0
Sample B Male 12.5
Sample C Female 15.3
Sample D Female 13.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70812744 Antisense, RP_050712_02_E06, Mouse strain C57BL/6J (56 days, male) 0.7
68302011 Antisense, RP_041130_02_C03, Mouse strain C57BL/6J (56 days, male) 0.3

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