MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.8 nTPM
HPA Brain:33.7 nTPM
GTEx:56.8 nTPM
FANTOM5:16.4 Scaled Tags Per Million
Pig:6.1 nTPM
Mouse:3.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.3
2828 Female, age 72, unknown 34.1
2666 Male, age 74, left hemisphere 31.4
2586 Male, age 75, left hemisphere 24.8
1870 Female, age 42, unknown 23.2
1830 Male, age 51, unknown 23.1
1827 Male, age 72, unknown 23.0
1833 Male, age 53, unknown 21.8
2019 Male, age 18, unknown 20.3
2411 Female, age 72, unknown 18.9
2219 Male, age 76, both hemispheres 12.3
Dorsal raphe nucleus
nTPM: 33.7
2016 Female, age 72, unknown 45.0
2298 Female, age 72, unknown 40.0
1828 Male, age 53, unknown 34.9
2047 Male, age 72, unknown 24.3
2750 Male, age 76, both hemispheres 24.2
Inferior colliculus
nTPM: 20.7
2849 Male, age 72, unknown 22.3
2097 Female, age 72, unknown 21.1
1848 Female, age 42, unknown 19.7
1890 Male, age 53, unknown 19.7
Median raphe nucleus
nTPM: 21.5
2220 Male, age 76, midline 21.5
Periaquaductal grey, anterior
nTPM: 19.6
1795 Male, age 51, unknown 29.4
1947 Male, age 18, unknown 16.6
2502 Female, age 75, unknown 12.8
Periaquaductal grey, dorsal
nTPM: 33.4
2850 Male, age 76, both hemispheres 39.4
1831 Male, age 72, unknown 36.2
1840 Male, age 53, unknown 31.5
2464 Female, age 72, unknown 26.7
Periaquaductal grey, lateral
nTPM: 32.9
2140 Male, age 76, both hemispheres 36.0
2053 Male, age 18, unknown 34.0
2272 Male, age 74, both hemispheres 28.8
Pretectal area
nTPM: 21.7
2316 Male, age 76, right hemisphere 33.0
2224 Female, age 72, unknown 30.4
2273 Male, age 74, both hemispheres 28.3
2825 Male, age 18, unknown 22.6
1817 Female, age 42, unknown 21.8
1815 Male, age 53, unknown 18.7
2407 Male, age 75, both hemispheres 18.6
1944 Female, age 72, unknown 17.8
2007 Male, age 72, unknown 16.6
2667 Female, age 75, unknown 16.2
1816 Male, age 51, unknown 14.2
Red nucleus
nTPM: 23.2
2823 Male, age 76, right hemisphere 31.5
2725 Female, age 75, unknown 30.4
2503 Female, age 72, unknown 30.3
2584 Male, age 75, left hemisphere 27.1
2227 Male, age 72, unknown 24.8
1865 Male, age 51, unknown 24.4
2769 Male, age 72, unknown 21.8
1904 Male, age 53, unknown 21.0
1821 Female, age 72, unknown 20.1
2785 Male, age 18, unknown 18.5
1954 Female, age 42, unknown 17.6
2588 Male, age 74, left hemisphere 11.2
Substantia nigra
nTPM: 33.1
2590 Female, age 75, unknown 59.3
2699 Male, age 18, unknown 51.6
1916 Female, age 42, unknown 36.3
2583 Male, age 75, right hemisphere 33.1
2665 Male, age 74, both hemispheres 31.2
1851 Male, age 51, unknown 31.1
2409 Female, age 72, unknown 27.3
2241 Male, age 72, unknown 23.5
1941 Male, age 53, unknown 21.7
1889 Female, age 72, unknown 16.2
Superior colliculus
nTPM: 26.0
1913 Female, age 42, unknown 43.4
1995 Male, age 72, unknown 42.2
2587 Male, age 74, left hemisphere 28.3
1796 Male, age 53, unknown 26.4
1839 Male, age 51, unknown 24.8
2664 Male, age 75, both hemispheres 22.2
2087 Female, age 72, unknown 20.2
2261 Male, age 18, unknown 19.6
2668 Female, age 75, unknown 17.2
1895 Male, age 76, right hemisphere 15.7
Ventral tegmental area
nTPM: 32.8
2021 Male, age 53, unknown 53.5
1915 Female, age 42, unknown 35.8
2223 Female, age 72, unknown 28.5
2410 Female, age 72, unknown 28.4
1942 Male, age 51, unknown 26.0
2218 Male, age 76, both hemispheres 24.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.8
Samples: 139

Max nTPM: 208.3
Min nTPM: 8.2
Std nTPM: 37.0
Median nTPM: 48.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 208.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 188.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 179.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 154.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 147.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 145.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 142.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 132.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 129.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 126.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 123.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.4
FF:10158-103A5 76 years, female 16.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.1
Samples: 4

Max nTPM: 9.7
Min nTPM: 3.2
Sample A Female 4.1
Sample B Female 9.7
Sample C Male 3.5
Sample D Male 3.2
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.7
Sample A Female 4.7
Sample B Female 3.3
Sample C Male 3.3
Sample D Male 2.7
Periaqueductal gray
nTPM: 3.1
Samples: 3

Max nTPM: 3.3
Min nTPM: 2.9
Sample B Female 3.3
Sample C Male 3.1
Sample D Male 2.9
Superior colliculi
nTPM: 6.1
Samples: 4

Max nTPM: 13.7
Min nTPM: 2.5
Sample A Female 5.3
Sample B Female 13.7
Sample C Male 2.9
Sample D Male 2.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.0
Sample A Male 3.5
Sample B Male 3.5
Sample C Female 2.0
Sample D Female 4.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67978490 Antisense, RP_040923_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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