MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:110.6 nTPM
HPA Brain:83.3 nTPM
GTEx:110.6 nTPM
FANTOM5:58.0 Scaled Tags Per Million
Pig:144.2 nTPM
Mouse:178.9 nTPM
Allen mouse:9.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.1
1827 Male, age 72, unknown 90.9
2019 Male, age 18, unknown 77.3
2666 Male, age 74, left hemisphere 76.5
2411 Female, age 72, unknown 74.4
2586 Male, age 75, left hemisphere 71.4
2828 Female, age 72, unknown 67.6
1870 Female, age 42, unknown 67.4
2219 Male, age 76, both hemispheres 59.0
1833 Male, age 53, unknown 54.0
1830 Male, age 51, unknown 52.5
Dorsal raphe nucleus
nTPM: 82.1
2298 Female, age 72, unknown 119.5
2047 Male, age 72, unknown 88.2
2750 Male, age 76, both hemispheres 73.6
1828 Male, age 53, unknown 73.5
2016 Female, age 72, unknown 55.9
Inferior colliculus
nTPM: 66.0
2097 Female, age 72, unknown 83.6
1890 Male, age 53, unknown 65.4
1848 Female, age 42, unknown 62.1
2849 Male, age 72, unknown 53.0
Median raphe nucleus
nTPM: 73.5
2220 Male, age 76, midline 73.5
Periaquaductal grey, anterior
nTPM: 81.0
1947 Male, age 18, unknown 96.6
1795 Male, age 51, unknown 86.7
2502 Female, age 75, unknown 59.7
Periaquaductal grey, dorsal
nTPM: 58.3
1840 Male, age 53, unknown 68.1
1831 Male, age 72, unknown 57.2
2850 Male, age 76, both hemispheres 54.2
2464 Female, age 72, unknown 53.8
Periaquaductal grey, lateral
nTPM: 65.2
2272 Male, age 74, both hemispheres 82.4
2053 Male, age 18, unknown 61.0
2140 Male, age 76, both hemispheres 52.4
Pretectal area
nTPM: 83.3
2007 Male, age 72, unknown 108.7
1816 Male, age 51, unknown 103.9
1817 Female, age 42, unknown 99.1
1944 Female, age 72, unknown 91.6
2224 Female, age 72, unknown 85.5
1815 Male, age 53, unknown 84.4
2273 Male, age 74, both hemispheres 82.9
2667 Female, age 75, unknown 78.6
2825 Male, age 18, unknown 62.7
2316 Male, age 76, right hemisphere 60.9
2407 Male, age 75, both hemispheres 57.4
Red nucleus
nTPM: 60.9
1821 Female, age 72, unknown 78.5
2725 Female, age 75, unknown 72.3
2785 Male, age 18, unknown 71.0
1954 Female, age 42, unknown 59.0
2584 Male, age 75, left hemisphere 58.8
2503 Female, age 72, unknown 57.6
2588 Male, age 74, left hemisphere 57.4
2769 Male, age 72, unknown 57.3
1904 Male, age 53, unknown 56.1
1865 Male, age 51, unknown 55.6
2227 Male, age 72, unknown 54.1
2823 Male, age 76, right hemisphere 53.6
Substantia nigra
nTPM: 80.7
1916 Female, age 42, unknown 112.3
1851 Male, age 51, unknown 99.1
1889 Female, age 72, unknown 95.6
1941 Male, age 53, unknown 94.6
2241 Male, age 72, unknown 76.4
2665 Male, age 74, both hemispheres 72.4
2583 Male, age 75, right hemisphere 68.6
2409 Female, age 72, unknown 68.0
2590 Female, age 75, unknown 61.2
2699 Male, age 18, unknown 59.0
Superior colliculus
nTPM: 70.8
2668 Female, age 75, unknown 102.9
1796 Male, age 53, unknown 85.7
2261 Male, age 18, unknown 78.2
2587 Male, age 74, left hemisphere 77.4
2087 Female, age 72, unknown 74.4
1895 Male, age 76, right hemisphere 70.1
1839 Male, age 51, unknown 59.7
1913 Female, age 42, unknown 56.2
1995 Male, age 72, unknown 53.4
2664 Male, age 75, both hemispheres 50.5
Ventral tegmental area
nTPM: 78.6
2410 Female, age 72, unknown 98.1
1915 Female, age 42, unknown 88.1
2218 Male, age 76, both hemispheres 84.4
1942 Male, age 51, unknown 72.5
2223 Female, age 72, unknown 65.4
2021 Male, age 53, unknown 63.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 110.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 110.6
Samples: 139

Max nTPM: 218.9
Min nTPM: 51.6
Std nTPM: 34.7
Median nTPM: 102.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 218.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 214.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 199.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 187.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 180.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 178.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 174.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 172.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 171.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 170.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 170.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.0
FF:10158-103A5 76 years, female 58.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 144.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 138.8
Samples: 4

Max nTPM: 194.4
Min nTPM: 83.4
Sample A Female 194.4
Sample B Female 110.5
Sample C Male 166.8
Sample D Male 83.4
Midbrain
nTPM: 144.2
Samples: 4

Max nTPM: 160.9
Min nTPM: 126.8
Sample A Female 160.9
Sample B Female 126.8
Sample C Male 151.3
Sample D Male 137.9
Periaqueductal gray
nTPM: 111.4
Samples: 3

Max nTPM: 137.0
Min nTPM: 97.0
Sample B Female 97.0
Sample C Male 137.0
Sample D Male 100.1
Superior colliculi
nTPM: 141.9
Samples: 4

Max nTPM: 183.1
Min nTPM: 102.4
Sample A Female 183.1
Sample B Female 102.4
Sample C Male 152.0
Sample D Male 129.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 178.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 178.9
Samples: 4

Max nTPM: 199.7
Min nTPM: 159.1
Sample A Male 199.7
Sample B Male 159.1
Sample C Female 165.6
Sample D Female 191.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
71836889 Antisense, RP_051017_02_F07, Mouse strain C57BL/6J (56 days, male) 11.6
68743955 Antisense, RP_050203_01_H10, Mouse strain C57BL/6J (56 days, male) 7.2

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