MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.3 nTPM
HPA Brain:14.2 nTPM
GTEx:4.3 nTPM
FANTOM5:17.2 Scaled Tags Per Million
Pig:7.8 nTPM
Mouse:5.8 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.2
2219 Male, age 76, both hemispheres 22.3
2666 Male, age 74, left hemisphere 16.2
1830 Male, age 51, unknown 15.7
2019 Male, age 18, unknown 14.1
1870 Female, age 42, unknown 13.8
1833 Male, age 53, unknown 13.1
1827 Male, age 72, unknown 12.1
2411 Female, age 72, unknown 11.8
2828 Female, age 72, unknown 11.8
2586 Male, age 75, left hemisphere 11.0
Dorsal raphe nucleus
nTPM: 11.7
2016 Female, age 72, unknown 14.0
2047 Male, age 72, unknown 12.7
1828 Male, age 53, unknown 11.7
2750 Male, age 76, both hemispheres 11.2
2298 Female, age 72, unknown 8.7
Inferior colliculus
nTPM: 13.7
1848 Female, age 42, unknown 14.7
1890 Male, age 53, unknown 14.2
2849 Male, age 72, unknown 13.1
2097 Female, age 72, unknown 12.8
Median raphe nucleus
nTPM: 13.6
2220 Male, age 76, midline 13.6
Periaquaductal grey, anterior
nTPM: 11.5
1947 Male, age 18, unknown 13.3
1795 Male, age 51, unknown 11.0
2502 Female, age 75, unknown 10.2
Periaquaductal grey, dorsal
nTPM: 11.7
2464 Female, age 72, unknown 13.2
1840 Male, age 53, unknown 11.7
1831 Male, age 72, unknown 11.3
2850 Male, age 76, both hemispheres 10.7
Periaquaductal grey, lateral
nTPM: 11.6
2272 Male, age 74, both hemispheres 12.3
2140 Male, age 76, both hemispheres 12.0
2053 Male, age 18, unknown 10.5
Pretectal area
nTPM: 11.3
2316 Male, age 76, right hemisphere 13.6
2407 Male, age 75, both hemispheres 13.0
2273 Male, age 74, both hemispheres 12.3
2667 Female, age 75, unknown 11.9
2825 Male, age 18, unknown 11.7
1815 Male, age 53, unknown 11.4
2224 Female, age 72, unknown 11.4
2007 Male, age 72, unknown 10.7
1817 Female, age 42, unknown 9.7
1944 Female, age 72, unknown 9.6
1816 Male, age 51, unknown 9.2
Red nucleus
nTPM: 12.9
2227 Male, age 72, unknown 15.1
1904 Male, age 53, unknown 14.3
2769 Male, age 72, unknown 14.1
1954 Female, age 42, unknown 13.6
2584 Male, age 75, left hemisphere 13.2
1865 Male, age 51, unknown 12.8
2588 Male, age 74, left hemisphere 12.7
2785 Male, age 18, unknown 12.7
1821 Female, age 72, unknown 12.6
2823 Male, age 76, right hemisphere 11.9
2503 Female, age 72, unknown 11.2
2725 Female, age 75, unknown 10.7
Substantia nigra
nTPM: 12.9
2583 Male, age 75, right hemisphere 14.1
2241 Male, age 72, unknown 14.0
2409 Female, age 72, unknown 13.8
2665 Male, age 74, both hemispheres 13.4
2699 Male, age 18, unknown 13.4
1941 Male, age 53, unknown 13.1
2590 Female, age 75, unknown 12.6
1889 Female, age 72, unknown 12.3
1851 Male, age 51, unknown 11.5
1916 Female, age 42, unknown 11.4
Superior colliculus
nTPM: 12.3
2668 Female, age 75, unknown 15.9
1839 Male, age 51, unknown 15.3
1913 Female, age 42, unknown 12.9
1895 Male, age 76, right hemisphere 12.7
1796 Male, age 53, unknown 11.7
2087 Female, age 72, unknown 11.5
2587 Male, age 74, left hemisphere 11.5
2261 Male, age 18, unknown 10.8
1995 Male, age 72, unknown 10.3
2664 Male, age 75, both hemispheres 10.2
Ventral tegmental area
nTPM: 12.0
2223 Female, age 72, unknown 13.3
1915 Female, age 42, unknown 12.2
2410 Female, age 72, unknown 12.2
1942 Male, age 51, unknown 11.9
2218 Male, age 76, both hemispheres 11.1
2021 Male, age 53, unknown 11.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.3
Samples: 139

Max nTPM: 9.8
Min nTPM: 2.4
Std nTPM: 1.0
Median nTPM: 4.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 9.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 7.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 6.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 6.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 6.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 5.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 5.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 5.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 5.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 5.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.2
FF:10158-103A5 76 years, female 17.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.0
Samples: 4

Max nTPM: 8.0
Min nTPM: 6.0
Sample A Female 6.4
Sample B Female 7.6
Sample C Male 8.0
Sample D Male 6.0
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 8.9
Min nTPM: 5.9
Sample A Female 7.2
Sample B Female 5.9
Sample C Male 7.7
Sample D Male 8.9
Periaqueductal gray
nTPM: 6.2
Samples: 3

Max nTPM: 6.5
Min nTPM: 6.0
Sample B Female 6.5
Sample C Male 6.1
Sample D Male 6.0
Superior colliculi
nTPM: 7.9
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 8.6
Sample C Male 7.9
Sample D Male 8.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.3
Sample A Male 5.6
Sample B Male 5.3
Sample C Female 6.0
Sample D Female 6.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70194630 Antisense, RP_050517_01_G07, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org