HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.9 nTPM
HPA Brain:132.6 nTPM
GTEx:19.9 nTPM
FANTOM5:157.3 Scaled Tags Per Million
Pig:89.4 nTPM
Mouse:130.0 nTPM
Allen mouse:9.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 132.6
Sample id Sample description nTPM
Hippocampus
nTPM: 70.1
1898 Male, age 80, left hemisphere 85.9
2148 Female, age 91, left hemisphere 79.7
2529 Female, age 94, left hemisphere 66.5
1855 Male, age 76, left hemisphere 65.0
1911 Female, age 85, right hemisphere 65.0
2621 Female, age 67, right hemisphere 58.5
Dentate gyrus
nTPM: 72.4
1927 Female, age 91, both hemispheres 118.2
2246 Female, age 85, both hemispheres 90.0
2531 Female, age 67, both hemispheres 64.9
2528 Male, age 74, both hemispheres 60.7
2010 Male, age 76, both hemispheres 58.5
2530 Female, age 94, left hemisphere 41.7
Entorhinal gyrus
nTPM: 119.1
1938 Female, age 85, left hemisphere 184.4
2613 Female, age 94, left hemisphere 149.8
1787 Male, age 76, left hemisphere 136.2
2764 Male, age 80, right hemisphere 117.4
2686 Male, age 75, right hemisphere 67.1
2117 Female, age 91, right hemisphere 59.4
Hippocampus, CA1
nTPM: 83.5
2749 Male, age 80, left hemisphere 111.0
1873 Female, age 85, both hemispheres 86.2
2082 Female, age 91, right hemisphere 80.7
2527 Male, age 74, both hemispheres 71.7
2045 Male, age 76, both hemispheres 67.8
Hippocampus, CA2
nTPM: 89.0
1892 Male, age 76, both hemispheres 154.6
1940 Female, age 85, left hemisphere 90.3
1963 Male, age 80, left hemisphere 87.8
2113 Female, age 91, right hemisphere 77.3
2249 Male, age 74, both hemispheres 62.5
2437 Female, age 94, left hemisphere 61.6
Hippocampus, CA3
nTPM: 81.1
1867 Male, age 76, both hemispheres 117.9
1891 Female, age 85, both hemispheres 93.5
2137 Male, age 80, left hemisphere 85.5
2620 Female, age 94, left hemisphere 71.3
2861 Female, age 67, both hemispheres 64.6
2436 Male, age 74, both hemispheres 53.9
Parahippocampal cortex
nTPM: 92.4
1850 Male, age 80, both hemispheres 177.7
1990 Female, age 91, right hemisphere 137.6
1933 Female, age 85, both hemispheres 105.9
2692 Male, age 74, both hemispheres 86.2
2622 Female, age 67, right hemisphere 73.9
2532 Female, age 72, left hemisphere 73.1
2693 Female, age 94, both hemispheres 70.7
2245 Female, age 91, both hemispheres 66.8
2250 Female, age 67, right hemisphere 66.7
2018 Male, age 76, both hemispheres 65.5
Perirhinal gyrus
nTPM: 132.6
1847 Female, age 91, left hemisphere 197.8
1794 Male, age 80, right hemisphere 141.2
1841 Female, age 85, right hemisphere 137.9
2848 Male, age 76, right hemisphere 103.1
2521 Female, age 94, right hemisphere 83.0
Subiculum
nTPM: 77.7
1977 Female, age 85, both hemispheres 107.2
2438 Female, age 94, left hemisphere 87.1
1901 Male, age 80, both hemispheres 86.5
2619 Male, age 74, both hemispheres 67.8
2729 Female, age 91, right hemisphere 63.1
2042 Male, age 76, both hemispheres 54.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.9
Samples: 197

Max nTPM: 81.8
Min nTPM: 2.5
Std nTPM: 16.9
Median nTPM: 14.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 81.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 80.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 76.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 74.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 71.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 69.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 68.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 63.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 63.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 61.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 57.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 157.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 157.3
FF:10153-102I9 76 years, female 158.9
FF:10169-103B7 60 years, female 155.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 89.4
Pig sample Sample description nTPM
Subiculum
nTPM: 63.5
Samples: 4

Max nTPM: 70.2
Min nTPM: 56.5
Sample A Female 70.2
Sample B Female 62.6
Sample C Male 64.8
Sample D Male 56.5
Dorsal hippocampus
nTPM: 89.4
Samples: 4

Max nTPM: 110.7
Min nTPM: 68.5
Sample A Female 110.7
Sample B Female 102.0
Sample C Male 68.5
Sample D Male 76.5
Entorhinal cortex
nTPM: 54.3
Samples: 4

Max nTPM: 69.6
Min nTPM: 41.9
Sample A Female 53.1
Sample B Female 69.6
Sample C Male 52.6
Sample D Male 41.9
Ventral hippocampus
nTPM: 67.5
Samples: 4

Max nTPM: 79.9
Min nTPM: 56.1
Sample A Female 67.0
Sample B Female 56.1
Sample C Male 66.8
Sample D Male 79.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 130.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 76.5
Samples: 4

Max nTPM: 96.0
Min nTPM: 58.5
Sample A Male 74.2
Sample B Male 58.5
Sample C Female 96.0
Sample D Female 77.3
Hippocampal formation
nTPM: 130.0
Samples: 4

Max nTPM: 145.0
Min nTPM: 110.8
Sample A Male 127.0
Sample B Male 145.0
Sample C Female 137.1
Sample D Female 110.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.7
71281865 Antisense, RP_050818_02_H04, Mouse strain C57BL/6J (56 days, male) 9.7
73616037 Antisense, RP_050818_02_H04, Mouse strain C57BL/6J (56 days, male) 7.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org