MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.6 nTPM
HPA Brain:54.9 nTPM
GTEx:13.6 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:63.7 nTPM
Mouse:30.0 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.3
2219 Male, age 76, both hemispheres 53.7
2666 Male, age 74, left hemisphere 52.2
1827 Male, age 72, unknown 51.6
2828 Female, age 72, unknown 50.0
2019 Male, age 18, unknown 45.0
1833 Male, age 53, unknown 38.6
1830 Male, age 51, unknown 37.9
2586 Male, age 75, left hemisphere 36.9
1870 Female, age 42, unknown 33.9
2411 Female, age 72, unknown 33.3
Dorsal raphe nucleus
nTPM: 32.9
2750 Male, age 76, both hemispheres 46.5
2047 Male, age 72, unknown 34.6
1828 Male, age 53, unknown 30.0
2016 Female, age 72, unknown 28.3
2298 Female, age 72, unknown 25.0
Inferior colliculus
nTPM: 46.8
2849 Male, age 72, unknown 50.6
1890 Male, age 53, unknown 45.7
2097 Female, age 72, unknown 45.5
1848 Female, age 42, unknown 45.4
Median raphe nucleus
nTPM: 42.4
2220 Male, age 76, midline 42.4
Periaquaductal grey, anterior
nTPM: 54.3
1947 Male, age 18, unknown 62.2
1795 Male, age 51, unknown 59.5
2502 Female, age 75, unknown 41.1
Periaquaductal grey, dorsal
nTPM: 43.0
2850 Male, age 76, both hemispheres 44.4
1831 Male, age 72, unknown 43.9
2464 Female, age 72, unknown 42.8
1840 Male, age 53, unknown 40.9
Periaquaductal grey, lateral
nTPM: 37.5
2053 Male, age 18, unknown 41.2
2140 Male, age 76, both hemispheres 37.9
2272 Male, age 74, both hemispheres 33.5
Pretectal area
nTPM: 54.9
1816 Male, age 51, unknown 79.1
1944 Female, age 72, unknown 72.6
2007 Male, age 72, unknown 67.2
1817 Female, age 42, unknown 65.7
1815 Male, age 53, unknown 64.7
2667 Female, age 75, unknown 53.9
2407 Male, age 75, both hemispheres 45.3
2316 Male, age 76, right hemisphere 44.0
2224 Female, age 72, unknown 38.5
2825 Male, age 18, unknown 38.3
2273 Male, age 74, both hemispheres 34.5
Red nucleus
nTPM: 42.2
2588 Male, age 74, left hemisphere 51.4
2725 Female, age 75, unknown 50.7
2503 Female, age 72, unknown 49.1
2584 Male, age 75, left hemisphere 46.8
2823 Male, age 76, right hemisphere 45.1
1954 Female, age 42, unknown 42.7
1865 Male, age 51, unknown 42.3
2785 Male, age 18, unknown 41.8
1904 Male, age 53, unknown 39.6
2227 Male, age 72, unknown 34.9
2769 Male, age 72, unknown 32.6
1821 Female, age 72, unknown 29.8
Substantia nigra
nTPM: 46.7
1889 Female, age 72, unknown 58.1
1916 Female, age 42, unknown 50.8
1941 Male, age 53, unknown 47.4
2241 Male, age 72, unknown 47.4
2583 Male, age 75, right hemisphere 47.1
2409 Female, age 72, unknown 46.2
2665 Male, age 74, both hemispheres 46.0
1851 Male, age 51, unknown 43.3
2590 Female, age 75, unknown 41.2
2699 Male, age 18, unknown 39.7
Superior colliculus
nTPM: 51.4
1796 Male, age 53, unknown 61.9
2087 Female, age 72, unknown 61.9
2261 Male, age 18, unknown 60.3
2668 Female, age 75, unknown 59.8
1895 Male, age 76, right hemisphere 52.7
1913 Female, age 42, unknown 50.1
2587 Male, age 74, left hemisphere 43.9
1995 Male, age 72, unknown 41.2
1839 Male, age 51, unknown 40.9
2664 Male, age 75, both hemispheres 40.8
Ventral tegmental area
nTPM: 43.8
2223 Female, age 72, unknown 55.3
2218 Male, age 76, both hemispheres 46.7
2410 Female, age 72, unknown 43.5
1915 Female, age 42, unknown 41.0
1942 Male, age 51, unknown 38.3
2021 Male, age 53, unknown 37.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.6
Samples: 139

Max nTPM: 39.4
Min nTPM: 6.6
Std nTPM: 4.5
Median nTPM: 12.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 39.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 27.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 27.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 26.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 25.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 22.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 21.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 20.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 19.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 19.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 19.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.3
Samples: 4

Max nTPM: 39.3
Min nTPM: 28.3
Sample A Female 31.6
Sample B Female 28.3
Sample C Male 39.3
Sample D Male 34.0
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 114.8
Min nTPM: 33.1
Sample A Female 33.1
Sample B Female 33.6
Sample C Male 114.8
Sample D Male 47.5
Periaqueductal gray
nTPM: 31.5
Samples: 3

Max nTPM: 32.8
Min nTPM: 29.1
Sample B Female 29.1
Sample C Male 32.6
Sample D Male 32.8
Superior colliculi
nTPM: 63.7
Samples: 4

Max nTPM: 106.2
Min nTPM: 35.8
Sample A Female 35.8
Sample B Female 54.5
Sample C Male 106.2
Sample D Male 58.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 34.1
Min nTPM: 25.3
Sample A Male 25.3
Sample B Male 29.8
Sample C Female 30.7
Sample D Female 34.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69133668 Antisense, RP_050321_02_A06, Mouse strain C57BL/6J (56 days, male) 0.8

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