MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:109.7 nTPM
HPA Brain:76.7 nTPM
GTEx:109.7 nTPM
FANTOM5:61.1 Scaled Tags Per Million
Mouse:63.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 76.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.0
2828 Female, age 72, unknown 77.2
2411 Female, age 72, unknown 74.4
1870 Female, age 42, unknown 74.2
1827 Male, age 72, unknown 69.6
2586 Male, age 75, left hemisphere 67.5
2019 Male, age 18, unknown 63.1
1830 Male, age 51, unknown 58.2
1833 Male, age 53, unknown 56.8
2666 Male, age 74, left hemisphere 56.8
2219 Male, age 76, both hemispheres 52.1
Dorsal raphe nucleus
nTPM: 72.3
2298 Female, age 72, unknown 83.3
2750 Male, age 76, both hemispheres 71.0
2016 Female, age 72, unknown 70.1
1828 Male, age 53, unknown 69.6
2047 Male, age 72, unknown 67.4
Inferior colliculus
nTPM: 66.1
2097 Female, age 72, unknown 78.4
1848 Female, age 42, unknown 66.2
1890 Male, age 53, unknown 64.8
2849 Male, age 72, unknown 55.2
Median raphe nucleus
nTPM: 67.0
2220 Male, age 76, midline 67.0
Periaquaductal grey, anterior
nTPM: 73.3
1795 Male, age 51, unknown 79.4
1947 Male, age 18, unknown 74.8
2502 Female, age 75, unknown 65.7
Periaquaductal grey, dorsal
nTPM: 66.7
1840 Male, age 53, unknown 73.3
1831 Male, age 72, unknown 72.6
2850 Male, age 76, both hemispheres 66.9
2464 Female, age 72, unknown 53.9
Periaquaductal grey, lateral
nTPM: 67.3
2272 Male, age 74, both hemispheres 75.3
2053 Male, age 18, unknown 64.7
2140 Male, age 76, both hemispheres 62.0
Pretectal area
nTPM: 76.7
2273 Male, age 74, both hemispheres 96.9
1815 Male, age 53, unknown 84.5
1817 Female, age 42, unknown 82.3
1816 Male, age 51, unknown 79.4
2007 Male, age 72, unknown 79.0
2224 Female, age 72, unknown 77.5
1944 Female, age 72, unknown 76.9
2667 Female, age 75, unknown 70.0
2316 Male, age 76, right hemisphere 68.1
2825 Male, age 18, unknown 67.2
2407 Male, age 75, both hemispheres 61.8
Red nucleus
nTPM: 71.2
2503 Female, age 72, unknown 84.1
2769 Male, age 72, unknown 82.9
1821 Female, age 72, unknown 82.5
2725 Female, age 75, unknown 77.8
1865 Male, age 51, unknown 74.3
1904 Male, age 53, unknown 73.8
2227 Male, age 72, unknown 73.1
2785 Male, age 18, unknown 69.5
1954 Female, age 42, unknown 68.0
2823 Male, age 76, right hemisphere 64.1
2584 Male, age 75, left hemisphere 53.2
2588 Male, age 74, left hemisphere 50.8
Substantia nigra
nTPM: 70.1
1916 Female, age 42, unknown 86.9
1851 Male, age 51, unknown 83.8
2699 Male, age 18, unknown 81.7
1889 Female, age 72, unknown 78.9
2590 Female, age 75, unknown 74.4
1941 Male, age 53, unknown 65.7
2665 Male, age 74, both hemispheres 63.9
2583 Male, age 75, right hemisphere 58.0
2241 Male, age 72, unknown 56.2
2409 Female, age 72, unknown 51.2
Superior colliculus
nTPM: 73.5
1796 Male, age 53, unknown 79.3
1913 Female, age 42, unknown 79.1
2087 Female, age 72, unknown 77.4
1995 Male, age 72, unknown 76.2
2668 Female, age 75, unknown 74.4
2261 Male, age 18, unknown 73.5
1895 Male, age 76, right hemisphere 72.3
2664 Male, age 75, both hemispheres 71.0
2587 Male, age 74, left hemisphere 69.3
1839 Male, age 51, unknown 62.8
Ventral tegmental area
nTPM: 72.6
2410 Female, age 72, unknown 85.7
1915 Female, age 42, unknown 78.3
2223 Female, age 72, unknown 76.7
2218 Male, age 76, both hemispheres 65.8
2021 Male, age 53, unknown 64.9
1942 Male, age 51, unknown 64.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.7
Samples: 139

Max nTPM: 262.8
Min nTPM: 40.6
Std nTPM: 38.0
Median nTPM: 104.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 262.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 239.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 229.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 217.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 205.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 188.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 183.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 182.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 182.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 177.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 173.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.1
FF:10158-103A5 76 years, female 61.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.9
Samples: 4

Max nTPM: 69.4
Min nTPM: 56.5
Sample A Male 69.4
Sample B Male 62.2
Sample C Female 56.5
Sample D Female 67.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68523195 Antisense, RP_050118_02_C09, Mouse strain C57BL/6J (56 days, male) 0.3

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