MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.4 nTPM
HPA Brain:49.9 nTPM
GTEx:11.4 nTPM
FANTOM5:51.1 Scaled Tags Per Million
Pig:57.9 nTPM
Mouse:192.0 nTPM
Allen mouse:12.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.0
2019 Male, age 18, unknown 66.7
2586 Male, age 75, left hemisphere 45.7
2219 Male, age 76, both hemispheres 36.9
1827 Male, age 72, unknown 35.7
2411 Female, age 72, unknown 33.2
1830 Male, age 51, unknown 32.1
1870 Female, age 42, unknown 28.8
2828 Female, age 72, unknown 28.5
1833 Male, age 53, unknown 28.0
2666 Male, age 74, left hemisphere 24.4
Dorsal raphe nucleus
nTPM: 20.7
2750 Male, age 76, both hemispheres 31.9
1828 Male, age 53, unknown 22.1
2047 Male, age 72, unknown 18.5
2298 Female, age 72, unknown 15.7
2016 Female, age 72, unknown 15.6
Inferior colliculus
nTPM: 45.1
2097 Female, age 72, unknown 59.1
1890 Male, age 53, unknown 46.1
1848 Female, age 42, unknown 39.5
2849 Male, age 72, unknown 35.9
Median raphe nucleus
nTPM: 23.2
2220 Male, age 76, midline 23.2
Periaquaductal grey, anterior
nTPM: 39.3
2502 Female, age 75, unknown 66.3
1795 Male, age 51, unknown 32.0
1947 Male, age 18, unknown 19.6
Periaquaductal grey, dorsal
nTPM: 25.2
1831 Male, age 72, unknown 34.8
2464 Female, age 72, unknown 30.8
1840 Male, age 53, unknown 20.8
2850 Male, age 76, both hemispheres 14.3
Periaquaductal grey, lateral
nTPM: 23.2
2053 Male, age 18, unknown 29.8
2272 Male, age 74, both hemispheres 21.0
2140 Male, age 76, both hemispheres 18.7
Pretectal area
nTPM: 49.9
1816 Male, age 51, unknown 87.4
2007 Male, age 72, unknown 73.7
1817 Female, age 42, unknown 69.6
1944 Female, age 72, unknown 67.7
1815 Male, age 53, unknown 55.1
2407 Male, age 75, both hemispheres 48.5
2667 Female, age 75, unknown 48.1
2316 Male, age 76, right hemisphere 28.7
2825 Male, age 18, unknown 27.7
2224 Female, age 72, unknown 21.3
2273 Male, age 74, both hemispheres 21.3
Red nucleus
nTPM: 46.3
2584 Male, age 75, left hemisphere 69.4
2785 Male, age 18, unknown 69.2
2588 Male, age 74, left hemisphere 58.6
2823 Male, age 76, right hemisphere 47.1
1865 Male, age 51, unknown 46.8
1821 Female, age 72, unknown 42.3
1954 Female, age 42, unknown 41.2
2227 Male, age 72, unknown 40.1
2503 Female, age 72, unknown 39.8
2769 Male, age 72, unknown 39.6
1904 Male, age 53, unknown 36.2
2725 Female, age 75, unknown 24.9
Substantia nigra
nTPM: 22.5
1889 Female, age 72, unknown 55.1
2583 Male, age 75, right hemisphere 44.3
1941 Male, age 53, unknown 34.9
2665 Male, age 74, both hemispheres 15.2
2241 Male, age 72, unknown 14.0
1916 Female, age 42, unknown 13.4
1851 Male, age 51, unknown 13.3
2409 Female, age 72, unknown 12.7
2590 Female, age 75, unknown 12.0
2699 Male, age 18, unknown 10.3
Superior colliculus
nTPM: 41.4
2087 Female, age 72, unknown 56.1
2668 Female, age 75, unknown 53.9
2261 Male, age 18, unknown 51.9
1895 Male, age 76, right hemisphere 41.0
1913 Female, age 42, unknown 40.0
2587 Male, age 74, left hemisphere 36.6
1995 Male, age 72, unknown 36.4
1839 Male, age 51, unknown 35.3
2664 Male, age 75, both hemispheres 31.6
1796 Male, age 53, unknown 31.4
Ventral tegmental area
nTPM: 25.1
2223 Female, age 72, unknown 33.8
2218 Male, age 76, both hemispheres 30.1
2410 Female, age 72, unknown 28.2
1942 Male, age 51, unknown 22.1
2021 Male, age 53, unknown 21.0
1915 Female, age 42, unknown 15.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.4
Samples: 139

Max nTPM: 46.0
Min nTPM: 1.4
Std nTPM: 8.1
Median nTPM: 9.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 46.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 41.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 39.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 36.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 36.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 32.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 29.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 29.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 28.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 25.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 25.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.1
FF:10158-103A5 76 years, female 51.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.6
Samples: 4

Max nTPM: 19.6
Min nTPM: 8.1
Sample A Female 19.6
Sample B Female 9.8
Sample C Male 16.8
Sample D Male 8.1
Midbrain
nTPM: 49.4
Samples: 4

Max nTPM: 87.6
Min nTPM: 12.0
Sample A Female 12.0
Sample B Female 15.0
Sample C Male 87.6
Sample D Male 83.0
Periaqueductal gray
nTPM: 16.9
Samples: 3

Max nTPM: 18.6
Min nTPM: 15.8
Sample B Female 16.2
Sample C Male 18.6
Sample D Male 15.8
Superior colliculi
nTPM: 57.9
Samples: 4

Max nTPM: 85.0
Min nTPM: 28.6
Sample A Female 61.8
Sample B Female 28.6
Sample C Male 85.0
Sample D Male 56.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 192.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 192.0
Samples: 4

Max nTPM: 204.4
Min nTPM: 177.5
Sample A Male 177.5
Sample B Male 197.2
Sample C Female 204.4
Sample D Female 189.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
1274 Antisense, RP_Baylor_102998, Mouse strain C57BL/6J (56 days, male) 12.1
1275 Antisense, RP_Baylor_102998, Mouse strain C57BL/6J (56 days, male) 8.2

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