MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.7 nTPM
HPA Brain:30.0 nTPM
GTEx:3.7 nTPM
FANTOM5:13.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.5
2586 Male, age 75, left hemisphere 32.3
2219 Male, age 76, both hemispheres 31.0
1833 Male, age 53, unknown 29.8
2411 Female, age 72, unknown 28.9
1830 Male, age 51, unknown 28.1
1827 Male, age 72, unknown 27.5
2666 Male, age 74, left hemisphere 27.5
2828 Female, age 72, unknown 27.2
1870 Female, age 42, unknown 26.3
2019 Male, age 18, unknown 26.0
Dorsal raphe nucleus
nTPM: 25.4
2750 Male, age 76, both hemispheres 29.8
2047 Male, age 72, unknown 25.9
1828 Male, age 53, unknown 25.5
2016 Female, age 72, unknown 25.4
2298 Female, age 72, unknown 20.3
Inferior colliculus
nTPM: 25.4
2849 Male, age 72, unknown 27.9
1848 Female, age 42, unknown 27.0
1890 Male, age 53, unknown 26.1
2097 Female, age 72, unknown 20.5
Median raphe nucleus
nTPM: 25.8
2220 Male, age 76, midline 25.8
Periaquaductal grey, anterior
nTPM: 23.8
1947 Male, age 18, unknown 27.0
1795 Male, age 51, unknown 22.5
2502 Female, age 75, unknown 21.9
Periaquaductal grey, dorsal
nTPM: 25.1
1831 Male, age 72, unknown 28.6
1840 Male, age 53, unknown 25.3
2850 Male, age 76, both hemispheres 24.8
2464 Female, age 72, unknown 21.7
Periaquaductal grey, lateral
nTPM: 25.2
2053 Male, age 18, unknown 28.2
2140 Male, age 76, both hemispheres 24.3
2272 Male, age 74, both hemispheres 23.2
Pretectal area
nTPM: 26.9
2407 Male, age 75, both hemispheres 32.0
1815 Male, age 53, unknown 31.5
1816 Male, age 51, unknown 30.7
1817 Female, age 42, unknown 27.7
1944 Female, age 72, unknown 27.4
2007 Male, age 72, unknown 26.9
2316 Male, age 76, right hemisphere 25.8
2667 Female, age 75, unknown 25.7
2825 Male, age 18, unknown 24.4
2273 Male, age 74, both hemispheres 22.1
2224 Female, age 72, unknown 21.1
Red nucleus
nTPM: 30.0
2503 Female, age 72, unknown 36.1
2588 Male, age 74, left hemisphere 34.5
2584 Male, age 75, left hemisphere 33.5
2823 Male, age 76, right hemisphere 30.9
1865 Male, age 51, unknown 29.6
2227 Male, age 72, unknown 29.6
2725 Female, age 75, unknown 29.6
1904 Male, age 53, unknown 28.7
1821 Female, age 72, unknown 28.5
2769 Male, age 72, unknown 28.4
2785 Male, age 18, unknown 27.4
1954 Female, age 42, unknown 23.8
Substantia nigra
nTPM: 26.0
2583 Male, age 75, right hemisphere 34.2
2590 Female, age 75, unknown 32.3
1889 Female, age 72, unknown 28.3
2699 Male, age 18, unknown 26.8
1941 Male, age 53, unknown 25.3
2665 Male, age 74, both hemispheres 24.4
1916 Female, age 42, unknown 24.0
1851 Male, age 51, unknown 23.3
2409 Female, age 72, unknown 21.6
2241 Male, age 72, unknown 20.1
Superior colliculus
nTPM: 27.3
1913 Female, age 42, unknown 29.8
2587 Male, age 74, left hemisphere 29.1
1995 Male, age 72, unknown 29.0
1895 Male, age 76, right hemisphere 27.6
2664 Male, age 75, both hemispheres 27.5
2261 Male, age 18, unknown 26.6
1839 Male, age 51, unknown 26.5
2087 Female, age 72, unknown 26.3
1796 Male, age 53, unknown 25.7
2668 Female, age 75, unknown 24.5
Ventral tegmental area
nTPM: 25.5
2218 Male, age 76, both hemispheres 28.4
2223 Female, age 72, unknown 27.5
1942 Male, age 51, unknown 26.9
2410 Female, age 72, unknown 25.3
1915 Female, age 42, unknown 23.1
2021 Male, age 53, unknown 21.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.7
Samples: 139

Max nTPM: 13.8
Min nTPM: 0.0
Std nTPM: 2.4
Median nTPM: 3.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 13.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 10.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 9.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 9.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 9.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 9.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 8.2
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 8.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 7.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 7.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 7.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.1
FF:10158-103A5 76 years, female 13.1

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