MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.9 nTPM
HPA Brain:38.8 nTPM
GTEx:24.9 nTPM
FANTOM5:78.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.0
2666 Male, age 74, left hemisphere 57.6
1827 Male, age 72, unknown 39.4
2019 Male, age 18, unknown 37.5
2411 Female, age 72, unknown 33.5
2219 Male, age 76, both hemispheres 30.2
2828 Female, age 72, unknown 29.9
1870 Female, age 42, unknown 28.1
1833 Male, age 53, unknown 25.9
1830 Male, age 51, unknown 23.9
2586 Male, age 75, left hemisphere 23.8
Dorsal raphe nucleus
nTPM: 30.4
2298 Female, age 72, unknown 37.7
1828 Male, age 53, unknown 33.9
2750 Male, age 76, both hemispheres 29.7
2047 Male, age 72, unknown 29.1
2016 Female, age 72, unknown 21.5
Inferior colliculus
nTPM: 28.7
2097 Female, age 72, unknown 36.7
1848 Female, age 42, unknown 27.6
1890 Male, age 53, unknown 26.9
2849 Male, age 72, unknown 23.4
Median raphe nucleus
nTPM: 38.8
2220 Male, age 76, midline 38.8
Periaquaductal grey, anterior
nTPM: 31.1
1795 Male, age 51, unknown 34.7
1947 Male, age 18, unknown 30.3
2502 Female, age 75, unknown 28.3
Periaquaductal grey, dorsal
nTPM: 23.7
1831 Male, age 72, unknown 27.2
2464 Female, age 72, unknown 24.7
1840 Male, age 53, unknown 23.6
2850 Male, age 76, both hemispheres 19.3
Periaquaductal grey, lateral
nTPM: 22.9
2272 Male, age 74, both hemispheres 26.1
2053 Male, age 18, unknown 24.0
2140 Male, age 76, both hemispheres 18.6
Pretectal area
nTPM: 35.4
1816 Male, age 51, unknown 54.6
1817 Female, age 42, unknown 53.1
2007 Male, age 72, unknown 50.8
1944 Female, age 72, unknown 43.4
1815 Male, age 53, unknown 36.6
2224 Female, age 72, unknown 34.2
2667 Female, age 75, unknown 26.6
2825 Male, age 18, unknown 26.4
2316 Male, age 76, right hemisphere 24.8
2407 Male, age 75, both hemispheres 19.8
2273 Male, age 74, both hemispheres 19.2
Red nucleus
nTPM: 25.2
2588 Male, age 74, left hemisphere 34.8
2785 Male, age 18, unknown 33.5
1821 Female, age 72, unknown 30.7
2725 Female, age 75, unknown 28.7
2584 Male, age 75, left hemisphere 27.3
2823 Male, age 76, right hemisphere 26.0
1954 Female, age 42, unknown 21.6
2503 Female, age 72, unknown 21.0
2769 Male, age 72, unknown 20.1
1904 Male, age 53, unknown 19.9
2227 Male, age 72, unknown 19.8
1865 Male, age 51, unknown 19.4
Substantia nigra
nTPM: 34.7
1916 Female, age 42, unknown 44.3
2241 Male, age 72, unknown 41.6
1889 Female, age 72, unknown 39.3
1941 Male, age 53, unknown 38.3
2409 Female, age 72, unknown 36.4
2665 Male, age 74, both hemispheres 35.7
1851 Male, age 51, unknown 34.0
2590 Female, age 75, unknown 29.5
2583 Male, age 75, right hemisphere 27.9
2699 Male, age 18, unknown 20.1
Superior colliculus
nTPM: 28.3
2087 Female, age 72, unknown 40.1
2668 Female, age 75, unknown 37.0
2261 Male, age 18, unknown 35.0
1796 Male, age 53, unknown 33.0
1839 Male, age 51, unknown 28.1
2587 Male, age 74, left hemisphere 27.0
1895 Male, age 76, right hemisphere 24.5
1913 Female, age 42, unknown 23.0
1995 Male, age 72, unknown 19.0
2664 Male, age 75, both hemispheres 16.2
Ventral tegmental area
nTPM: 31.1
1915 Female, age 42, unknown 35.9
2410 Female, age 72, unknown 34.8
2218 Male, age 76, both hemispheres 31.3
2021 Male, age 53, unknown 28.9
2223 Female, age 72, unknown 28.4
1942 Male, age 51, unknown 27.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.9
Samples: 139

Max nTPM: 126.3
Min nTPM: 2.5
Std nTPM: 18.0
Median nTPM: 19.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 126.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 75.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 71.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 70.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 69.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 68.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 65.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 63.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 56.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 55.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 54.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.3
FF:10158-103A5 76 years, female 78.3

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