BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.7 nTPM
HPA Brain:5.5 nTPM
GTEx:4.7 nTPM
Pig:0.2 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.9
2481 Female, age 94, left hemisphere 8.0
2288 Male, age 75, left hemisphere 6.9
1857 Female, age 85, left hemisphere 5.0
2290 Female, age 72, unknown 4.7
2289 Male, age 61, right hemisphere 4.1
1854 Male, age 80, left hemisphere 3.9
2846 Female, age 79, unknown 3.8
1781 Male, age 74, unknown 2.4
Globus pallidus, externus
nTPM: 5.5
1996 Male, age 80, right hemisphere 8.6
2646 Male, age 61, right hemisphere 6.6
2772 Female, age 79, unknown 4.8
2567 Female, age 72, unknown 4.0
2395 Male, age 75, both hemispheres 3.6
Globus pallidus, internus
nTPM: 4.5
2483 Female, age 94, right hemisphere 6.8
2037 Male, age 80, right hemisphere 6.6
1818 Male, age 74, unknown 6.0
2287 Male, age 75, right hemisphere 3.5
2111 Female, age 85, right hemisphere 2.9
2566 Female, age 72, unknown 2.8
2778 Female, age 91, both hemispheres 2.7
Nucleus accumbens
nTPM: 3.2
2286 Male, age 75, left hemisphere 6.9
1806 Female, age 85, left hemisphere 3.8
1856 Female, age 91, right hemisphere 3.3
2391 Female, age 94, left hemisphere 2.8
1783 Male, age 74, unknown 2.7
2824 Male, age 61, right hemisphere 2.4
2698 Female, age 72, unknown 1.9
2732 Male, age 80, right hemisphere 1.6
Nucleus basalis of Meynert
nTPM: 4.1
2569 Male, age 61, both hemispheres 7.2
2484 Female, age 94, left hemisphere 3.5
2393 Male, age 80, right hemisphere 2.9
2821 Male, age 75, both hemispheres 2.9
Nucleus of the diagonal band
nTPM: 2.1
1979 Male, age 74, unknown 2.4
2775 Male, age 80, right hemisphere 2.3
2029 Male, age 61, right hemisphere 2.2
2195 Female, age 85, both hemispheres 2.0
1812 Female, age 91, both hemispheres 1.7
Putamen
nTPM: 4.6
2482 Female, age 94, left hemisphere 6.1
2489 Female, age 72, unknown 5.4
2647 Male, age 75, left hemisphere 5.3
2466 Female, age 79, unknown 4.8
1829 Male, age 74, unknown 4.0
1937 Female, age 91, right hemisphere 3.7
1838 Male, age 80, right hemisphere 3.1
Septal nuclei
nTPM: 2.6
2199 Male, age 80, right hemisphere 5.3
2059 Female, age 85, both hemispheres 3.2
2009 Female, age 91, both hemispheres 2.4
2394 Male, age 61, left hemisphere 2.0
2629 Female, age 94, right hemisphere 1.9
2031 Female, age 72, unknown 1.8
1960 Male, age 74, unknown 1.7
Stria terminalis, bed nucleus
nTPM: 1.9
2201 Male, age 74, unknown 2.6
2486 Female, age 94, both hemispheres 1.7
1974 Female, age 91, both hemispheres 1.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.3
Samples: 246

Max nTPM: 16.6
Min nTPM: 0.1
Std nTPM: 2.6
Median nTPM: 3.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 16.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 14.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 12.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 12.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 12.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 12.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 11.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 10.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 10.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 10.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 9.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.9
Samples: 246

Max nTPM: 10.1
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 1.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 10.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 7.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 6.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 5.2
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 4.8
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 4.8
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 4.2
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 4.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 4.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 4.1
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 4.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 4.7
Samples: 205

Max nTPM: 18.8
Min nTPM: 0.0
Std nTPM: 3.1
Median nTPM: 4.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 18.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 17.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 13.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 13.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 12.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 11.9
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 11.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 10.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 10.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 10.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 10.7
Show allShow less

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.2
Pig sample Sample description nTPM
Caudate
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.1
Putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.2
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.3
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.1
Ventral pallidum
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.2
Sample D Male 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org