MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.9 nTPM
HPA Brain:59.5 nTPM
GTEx:51.9 nTPM
FANTOM5:110.3 Scaled Tags Per Million
Pig:90.1 nTPM
Mouse:67.0 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.4
1870 Female, age 42, unknown 59.7
1827 Male, age 72, unknown 59.5
2019 Male, age 18, unknown 58.3
2411 Female, age 72, unknown 57.1
1830 Male, age 51, unknown 54.7
1833 Male, age 53, unknown 54.7
2666 Male, age 74, left hemisphere 51.4
2828 Female, age 72, unknown 51.3
2219 Male, age 76, both hemispheres 49.0
2586 Male, age 75, left hemisphere 48.7
Dorsal raphe nucleus
nTPM: 54.4
2016 Female, age 72, unknown 62.6
2298 Female, age 72, unknown 54.7
1828 Male, age 53, unknown 54.2
2750 Male, age 76, both hemispheres 53.4
2047 Male, age 72, unknown 47.2
Inferior colliculus
nTPM: 56.0
1848 Female, age 42, unknown 58.0
2849 Male, age 72, unknown 56.3
2097 Female, age 72, unknown 56.0
1890 Male, age 53, unknown 53.9
Median raphe nucleus
nTPM: 46.7
2220 Male, age 76, midline 46.7
Periaquaductal grey, anterior
nTPM: 54.4
1947 Male, age 18, unknown 57.6
2502 Female, age 75, unknown 56.1
1795 Male, age 51, unknown 49.6
Periaquaductal grey, dorsal
nTPM: 58.6
1840 Male, age 53, unknown 64.1
2850 Male, age 76, both hemispheres 58.5
1831 Male, age 72, unknown 57.7
2464 Female, age 72, unknown 54.2
Periaquaductal grey, lateral
nTPM: 55.4
2140 Male, age 76, both hemispheres 57.5
2053 Male, age 18, unknown 57.3
2272 Male, age 74, both hemispheres 51.4
Pretectal area
nTPM: 55.8
2007 Male, age 72, unknown 61.2
1815 Male, age 53, unknown 60.6
1817 Female, age 42, unknown 60.5
1816 Male, age 51, unknown 56.3
2825 Male, age 18, unknown 56.3
1944 Female, age 72, unknown 55.7
2224 Female, age 72, unknown 54.8
2316 Male, age 76, right hemisphere 54.4
2273 Male, age 74, both hemispheres 53.4
2407 Male, age 75, both hemispheres 51.8
2667 Female, age 75, unknown 48.7
Red nucleus
nTPM: 59.5
2503 Female, age 72, unknown 69.0
1821 Female, age 72, unknown 64.8
1865 Male, age 51, unknown 63.5
2725 Female, age 75, unknown 63.4
1954 Female, age 42, unknown 61.4
2588 Male, age 74, left hemisphere 60.0
2823 Male, age 76, right hemisphere 57.5
1904 Male, age 53, unknown 55.5
2769 Male, age 72, unknown 55.1
2785 Male, age 18, unknown 55.0
2584 Male, age 75, left hemisphere 54.2
2227 Male, age 72, unknown 54.1
Substantia nigra
nTPM: 52.9
1889 Female, age 72, unknown 58.8
2583 Male, age 75, right hemisphere 55.4
2590 Female, age 75, unknown 55.2
2241 Male, age 72, unknown 54.8
2409 Female, age 72, unknown 52.3
2665 Male, age 74, both hemispheres 52.2
1941 Male, age 53, unknown 51.7
2699 Male, age 18, unknown 51.7
1851 Male, age 51, unknown 51.0
1916 Female, age 42, unknown 46.4
Superior colliculus
nTPM: 56.6
1995 Male, age 72, unknown 61.7
1895 Male, age 76, right hemisphere 61.3
1913 Female, age 42, unknown 60.4
2587 Male, age 74, left hemisphere 60.2
1839 Male, age 51, unknown 58.4
2668 Female, age 75, unknown 55.8
1796 Male, age 53, unknown 53.5
2664 Male, age 75, both hemispheres 52.7
2261 Male, age 18, unknown 52.2
2087 Female, age 72, unknown 50.2
Ventral tegmental area
nTPM: 49.5
2410 Female, age 72, unknown 52.1
2223 Female, age 72, unknown 50.5
1915 Female, age 42, unknown 50.2
1942 Male, age 51, unknown 49.8
2021 Male, age 53, unknown 49.4
2218 Male, age 76, both hemispheres 44.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.9
Samples: 139

Max nTPM: 116.2
Min nTPM: 31.9
Std nTPM: 14.4
Median nTPM: 47.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 116.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 103.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 93.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 90.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 88.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 85.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 83.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 82.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 82.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 79.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 78.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.3
FF:10158-103A5 76 years, female 110.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 90.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.8
Samples: 4

Max nTPM: 88.6
Min nTPM: 68.7
Sample A Female 88.6
Sample B Female 68.7
Sample C Male 74.1
Sample D Male 75.9
Midbrain
nTPM: 90.1
Samples: 4

Max nTPM: 103.7
Min nTPM: 85.1
Sample A Female 103.7
Sample B Female 85.2
Sample C Male 86.2
Sample D Male 85.1
Periaqueductal gray
nTPM: 77.0
Samples: 3

Max nTPM: 79.3
Min nTPM: 72.4
Sample B Female 72.4
Sample C Male 79.3
Sample D Male 79.3
Superior colliculi
nTPM: 86.1
Samples: 4

Max nTPM: 94.9
Min nTPM: 71.9
Sample A Female 94.9
Sample B Female 71.9
Sample C Male 88.6
Sample D Male 88.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.0
Samples: 4

Max nTPM: 72.7
Min nTPM: 61.6
Sample A Male 61.6
Sample B Male 69.5
Sample C Female 72.7
Sample D Female 64.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
532735 Antisense, RP_040825_01_H09, Mouse strain C57BL/6J (56 days, male) 0.6

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