MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:121.3 nTPM
HPA Brain:72.8 nTPM
GTEx:121.3 nTPM
FANTOM5:71.0 Scaled Tags Per Million
Pig:104.2 nTPM
Mouse:31.0 nTPM
Allen mouse:7.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.3
2219 Male, age 76, both hemispheres 95.8
2666 Male, age 74, left hemisphere 91.9
1827 Male, age 72, unknown 68.2
2586 Male, age 75, left hemisphere 64.9
2828 Female, age 72, unknown 63.2
2019 Male, age 18, unknown 56.7
1833 Male, age 53, unknown 51.3
1830 Male, age 51, unknown 48.9
1870 Female, age 42, unknown 45.2
2411 Female, age 72, unknown 36.8
Dorsal raphe nucleus
nTPM: 30.3
1828 Male, age 53, unknown 36.8
2016 Female, age 72, unknown 31.8
2298 Female, age 72, unknown 28.6
2047 Male, age 72, unknown 27.4
2750 Male, age 76, both hemispheres 27.0
Inferior colliculus
nTPM: 72.8
2097 Female, age 72, unknown 81.0
2849 Male, age 72, unknown 76.5
1848 Female, age 42, unknown 68.1
1890 Male, age 53, unknown 65.6
Median raphe nucleus
nTPM: 27.3
2220 Male, age 76, midline 27.3
Periaquaductal grey, anterior
nTPM: 56.9
2502 Female, age 75, unknown 63.3
1795 Male, age 51, unknown 59.0
1947 Male, age 18, unknown 48.2
Periaquaductal grey, dorsal
nTPM: 45.6
2464 Female, age 72, unknown 51.8
1831 Male, age 72, unknown 51.5
1840 Male, age 53, unknown 46.2
2850 Male, age 76, both hemispheres 32.9
Periaquaductal grey, lateral
nTPM: 39.8
2053 Male, age 18, unknown 49.3
2140 Male, age 76, both hemispheres 35.8
2272 Male, age 74, both hemispheres 34.4
Pretectal area
nTPM: 61.2
1816 Male, age 51, unknown 95.0
1817 Female, age 42, unknown 85.4
2007 Male, age 72, unknown 84.3
1944 Female, age 72, unknown 79.3
1815 Male, age 53, unknown 71.8
2316 Male, age 76, right hemisphere 55.8
2825 Male, age 18, unknown 46.3
2667 Female, age 75, unknown 45.5
2407 Male, age 75, both hemispheres 39.8
2224 Female, age 72, unknown 35.5
2273 Male, age 74, both hemispheres 34.4
Red nucleus
nTPM: 60.7
2588 Male, age 74, left hemisphere 88.6
2725 Female, age 75, unknown 82.2
2785 Male, age 18, unknown 68.0
2503 Female, age 72, unknown 65.9
2584 Male, age 75, left hemisphere 64.8
2227 Male, age 72, unknown 53.9
1865 Male, age 51, unknown 52.6
1954 Female, age 42, unknown 52.3
1904 Male, age 53, unknown 51.9
2823 Male, age 76, right hemisphere 50.8
2769 Male, age 72, unknown 50.5
1821 Female, age 72, unknown 46.6
Substantia nigra
nTPM: 52.7
2665 Male, age 74, both hemispheres 72.9
1889 Female, age 72, unknown 66.0
1851 Male, age 51, unknown 59.7
2699 Male, age 18, unknown 51.1
2409 Female, age 72, unknown 50.9
1941 Male, age 53, unknown 50.4
2590 Female, age 75, unknown 47.0
2583 Male, age 75, right hemisphere 46.7
1916 Female, age 42, unknown 45.4
2241 Male, age 72, unknown 36.9
Superior colliculus
nTPM: 64.2
1796 Male, age 53, unknown 83.8
2087 Female, age 72, unknown 73.8
2261 Male, age 18, unknown 68.9
1895 Male, age 76, right hemisphere 64.8
1995 Male, age 72, unknown 62.7
1913 Female, age 42, unknown 59.7
2664 Male, age 75, both hemispheres 57.6
1839 Male, age 51, unknown 57.3
2668 Female, age 75, unknown 57.0
2587 Male, age 74, left hemisphere 55.9
Ventral tegmental area
nTPM: 53.1
2223 Female, age 72, unknown 94.0
1915 Female, age 42, unknown 51.3
2410 Female, age 72, unknown 49.6
2218 Male, age 76, both hemispheres 48.0
1942 Male, age 51, unknown 38.8
2021 Male, age 53, unknown 37.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 121.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 121.3
Samples: 139

Max nTPM: 355.0
Min nTPM: 28.9
Std nTPM: 66.5
Median nTPM: 104.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 355.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 333.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 324.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 307.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 304.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 293.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 276.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 260.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 260.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 256.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 238.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.0
FF:10158-103A5 76 years, female 71.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 104.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.9
Samples: 4

Max nTPM: 81.5
Min nTPM: 59.2
Sample A Female 76.7
Sample B Female 70.2
Sample C Male 81.5
Sample D Male 59.2
Midbrain
nTPM: 80.5
Samples: 4

Max nTPM: 111.9
Min nTPM: 39.1
Sample A Female 39.1
Sample B Female 61.8
Sample C Male 109.0
Sample D Male 111.9
Periaqueductal gray
nTPM: 38.3
Samples: 3

Max nTPM: 41.4
Min nTPM: 34.9
Sample B Female 38.5
Sample C Male 41.4
Sample D Male 34.9
Superior colliculi
nTPM: 104.3
Samples: 4

Max nTPM: 120.6
Min nTPM: 78.7
Sample A Female 116.3
Sample B Female 78.7
Sample C Male 120.6
Sample D Male 101.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 33.8
Min nTPM: 27.9
Sample A Male 33.8
Sample B Male 27.9
Sample C Female 30.1
Sample D Female 32.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
68797501 Antisense, RP_050125_02_E12, Mouse strain C57BL/6J (56 days, male) 7.4

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