MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.5 nTPM
HPA Brain:52.1 nTPM
GTEx:21.5 nTPM
FANTOM5:62.1 Scaled Tags Per Million
Pig:36.3 nTPM
Mouse:58.2 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.0
2586 Male, age 75, left hemisphere 64.6
2019 Male, age 18, unknown 54.0
1827 Male, age 72, unknown 51.6
2828 Female, age 72, unknown 49.1
2666 Male, age 74, left hemisphere 47.6
1833 Male, age 53, unknown 46.9
2411 Female, age 72, unknown 46.0
1830 Male, age 51, unknown 45.6
1870 Female, age 42, unknown 44.8
2219 Male, age 76, both hemispheres 39.4
Dorsal raphe nucleus
nTPM: 44.6
1828 Male, age 53, unknown 46.2
2298 Female, age 72, unknown 45.3
2750 Male, age 76, both hemispheres 44.1
2047 Male, age 72, unknown 43.9
2016 Female, age 72, unknown 43.1
Inferior colliculus
nTPM: 48.0
1848 Female, age 42, unknown 49.1
1890 Male, age 53, unknown 48.6
2849 Male, age 72, unknown 47.2
2097 Female, age 72, unknown 47.0
Median raphe nucleus
nTPM: 47.0
2220 Male, age 76, midline 47.0
Periaquaductal grey, anterior
nTPM: 47.6
2502 Female, age 75, unknown 50.3
1947 Male, age 18, unknown 47.3
1795 Male, age 51, unknown 45.1
Periaquaductal grey, dorsal
nTPM: 45.7
2850 Male, age 76, both hemispheres 47.8
1840 Male, age 53, unknown 45.8
1831 Male, age 72, unknown 45.0
2464 Female, age 72, unknown 44.3
Periaquaductal grey, lateral
nTPM: 47.4
2140 Male, age 76, both hemispheres 53.2
2053 Male, age 18, unknown 45.2
2272 Male, age 74, both hemispheres 43.6
Pretectal area
nTPM: 51.2
1816 Male, age 51, unknown 57.5
2316 Male, age 76, right hemisphere 57.5
2007 Male, age 72, unknown 57.1
1944 Female, age 72, unknown 55.8
1817 Female, age 42, unknown 55.3
1815 Male, age 53, unknown 53.5
2667 Female, age 75, unknown 47.7
2407 Male, age 75, both hemispheres 46.0
2273 Male, age 74, both hemispheres 45.1
2224 Female, age 72, unknown 44.8
2825 Male, age 18, unknown 43.1
Red nucleus
nTPM: 47.3
2785 Male, age 18, unknown 55.6
2584 Male, age 75, left hemisphere 52.9
2227 Male, age 72, unknown 47.3
1865 Male, age 51, unknown 47.2
1821 Female, age 72, unknown 46.9
1904 Male, age 53, unknown 46.2
1954 Female, age 42, unknown 46.1
2725 Female, age 75, unknown 45.7
2503 Female, age 72, unknown 45.5
2823 Male, age 76, right hemisphere 45.5
2588 Male, age 74, left hemisphere 44.7
2769 Male, age 72, unknown 44.3
Substantia nigra
nTPM: 52.1
2409 Female, age 72, unknown 56.8
1916 Female, age 42, unknown 54.5
1941 Male, age 53, unknown 54.1
1889 Female, age 72, unknown 52.7
2241 Male, age 72, unknown 52.1
1851 Male, age 51, unknown 51.6
2583 Male, age 75, right hemisphere 51.6
2590 Female, age 75, unknown 51.6
2665 Male, age 74, both hemispheres 50.7
2699 Male, age 18, unknown 45.3
Superior colliculus
nTPM: 49.3
2087 Female, age 72, unknown 55.4
2261 Male, age 18, unknown 53.3
2664 Male, age 75, both hemispheres 52.1
2668 Female, age 75, unknown 51.7
1839 Male, age 51, unknown 49.6
1796 Male, age 53, unknown 49.0
1913 Female, age 42, unknown 46.2
1995 Male, age 72, unknown 45.8
1895 Male, age 76, right hemisphere 45.7
2587 Male, age 74, left hemisphere 43.8
Ventral tegmental area
nTPM: 46.2
1915 Female, age 42, unknown 49.1
2218 Male, age 76, both hemispheres 48.2
2410 Female, age 72, unknown 47.5
1942 Male, age 51, unknown 45.8
2223 Female, age 72, unknown 44.1
2021 Male, age 53, unknown 42.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.5
Samples: 139

Max nTPM: 37.1
Min nTPM: 14.8
Std nTPM: 3.9
Median nTPM: 20.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 35.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 34.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 33.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 31.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 30.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 29.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 28.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 28.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 27.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.1
FF:10158-103A5 76 years, female 62.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.8
Samples: 4

Max nTPM: 34.6
Min nTPM: 30.1
Sample A Female 32.0
Sample B Female 30.1
Sample C Male 34.4
Sample D Male 34.6
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 46.1
Min nTPM: 27.6
Sample A Female 35.1
Sample B Female 27.6
Sample C Male 46.1
Sample D Male 34.7
Periaqueductal gray
nTPM: 28.7
Samples: 3

Max nTPM: 32.5
Min nTPM: 25.7
Sample B Female 25.7
Sample C Male 32.5
Sample D Male 27.9
Superior colliculi
nTPM: 36.3
Samples: 4

Max nTPM: 40.1
Min nTPM: 33.2
Sample A Female 33.2
Sample B Female 33.8
Sample C Male 40.1
Sample D Male 37.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.3
Samples: 4

Max nTPM: 59.9
Min nTPM: 57.6
Sample A Male 57.6
Sample B Male 57.8
Sample C Female 59.9
Sample D Female 57.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
513497 Antisense, RP_040810_02_A07, Mouse strain C57BL/6J (56 days, male) 2.5

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