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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.1
nTPM
Monaco:
71.2
nTPM
Schmiedel:
60.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
28.1
HPA sample
nTPM
gdT-cell nTPM: 14.7
Samples: 6
Max nTPM: 19.1
Min nTPM: 10.3
P10809_1007
13.3
P10809_1022
16.2
P10809_1041
10.3
P10809_1060
15.3
P10809_1077
19.1
P10809_1098
13.9
MAIT T-cell nTPM: 22.2
Samples: 6
Max nTPM: 31.0
Min nTPM: 15.3
P10809_1006
22.0
P10809_1024
31.0
P10809_1043
16.6
P10809_1062
21.5
P10809_1083
26.7
P10809_1097
15.3
Memory CD4 T-cell nTPM: 18.2
Samples: 6
Max nTPM: 22.7
Min nTPM: 15.4
P10809_1014
20.1
P10809_1026
18.4
P10809_1045
16.9
P10809_1064
15.9
P10809_1086
22.7
P10809_1113
15.4
Memory CD8 T-cell nTPM: 18.2
Samples: 5
Max nTPM: 21.4
Min nTPM: 12.8
P10809_1012
20.5
P10809_1027
17.1
P10809_1046
12.8
P10809_1065
19.1
P10809_1111
21.4
Naive CD4 T-cell nTPM: 12.8
Samples: 6
Max nTPM: 16.3
Min nTPM: 9.4
P10809_1015
15.3
P10809_1030
9.4
P10809_1049
9.9
P10809_1068
16.3
P10809_1085
10.7
P10809_1112
15.0
Naive CD8 T-cell nTPM: 15.7
Samples: 6
Max nTPM: 19.9
Min nTPM: 7.3
P10809_1016
15.9
P10809_1031
7.3
P10809_1050
17.2
P10809_1069
19.7
P10809_1087
19.9
P10809_1110
14.3
T-reg nTPM: 28.2
Samples: 6
Max nTPM: 39.1
Min nTPM: 19.8
P10809_1018
29.0
P10809_1037
35.4
P10809_1056
19.8
P10809_1075
39.1
P10809_1094
21.9
P10809_1106
23.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
71.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 56.5
Samples: 4
Max nTPM: 66.5
Min nTPM: 41.8
RHH5202_R3573
41.8
RHH5230_R3602
66.5
RHH5259_R3631
55.7
RHH5288_R3660
61.8
Effector memory CD8 T-cell nTPM: 59.1
Samples: 4
Max nTPM: 83.5
Min nTPM: 41.8
RHH5203_R3574
83.5
RHH5231_R3603
61.1
RHH5260_R3632
50.0
RHH5289_R3661
41.8
MAIT T-cell nTPM: 58.4
Samples: 4
Max nTPM: 68.2
Min nTPM: 42.6
RHH5233_R3605
61.5
RHH5205_R3576
61.1
RHH5262_R3634
68.2
RHH5297_R3663
42.6
Memory CD4 T-cell TFH nTPM: 60.2
Samples: 4
Max nTPM: 69.8
Min nTPM: 49.5
RHH5300_R3666
53.2
RHH5236_R3608
49.5
RHH5265_R3637
68.3
RHH5208_R3579
69.8
Memory CD4 T-cell Th1 nTPM: 55.5
Samples: 4
Max nTPM: 66.7
Min nTPM: 45.9
RHH5210_R3581
52.2
RHH5302_R3668
45.9
RHH5238_R3610
66.7
RHH5267_R3639
57.1
Memory CD4 T-cell Th1/Th17 nTPM: 71.3
Samples: 4
Max nTPM: 92.0
Min nTPM: 62.6
RHH5303_R3669
62.6
RHH5211_R3582
64.4
RHH5239_R3611
92.0
RHH5268_R3640
66.0
Memory CD4 T-cell Th17 nTPM: 68.4
Samples: 4
Max nTPM: 86.5
Min nTPM: 60.5
RHH5304_R3670
65.5
RHH5212_R3583
60.5
RHH5240_R3612
61.1
RHH5269_R3641
86.5
Memory CD4 T-cell Th2 nTPM: 53.6
Samples: 4
Max nTPM: 70.8
Min nTPM: 45.7
RHH5305_R3671
45.7
RHH5213_R3584
49.9
RHH5241_R3613
48.1
RHH5270_R3642
70.8
Naive CD4 T-cell nTPM: 44.8
Samples: 4
Max nTPM: 56.6
Min nTPM: 39.2
RHH5306_R3672
42.8
RHH5214_R3585
40.4
RHH5242_R3614
39.2
RHH5271_R3643
56.6
Naive CD8 T-cell nTPM: 59.1
Samples: 4
Max nTPM: 71.3
Min nTPM: 52.4
RHH5201_R3572
58.4
RHH5229_R3601
54.2
RHH5258_R3630
71.3
RHH5287_R3659
52.4
Non-Vd2 gdTCR nTPM: 46.7
Samples: 4
Max nTPM: 57.5
Min nTPM: 35.1
RHH5235_R3607
57.5
RHH5264_R3636
48.0
RHH5207_R3578
46.3
RHH5299_R3665
35.1
T-reg nTPM: 57.4
Samples: 4
Max nTPM: 71.5
Min nTPM: 43.8
RHH5301_R3667
43.8
RHH5237_R3609
53.0
RHH5266_R3638
71.5
RHH5209_R3580
61.1
Terminal effector memory CD4 T-cell nTPM: 64.7
Samples: 2
Max nTPM: 70.7
Min nTPM: 58.6
RHH5243_R3615
70.7
RHH5272_R3644
58.6
Terminal effector memory CD8 T-cell nTPM: 51.6
Samples: 4
Max nTPM: 59.5
Min nTPM: 39.9
RHH5232_R3604
59.5
RHH5204_R3575
51.5
RHH5261_R3633
55.3
RHH5296_R3662
39.9
Vd2 gdTCR nTPM: 50.5
Samples: 4
Max nTPM: 64.4
Min nTPM: 34.8
RHH5234_R3606
53.9
RHH5206_R3577
34.8
RHH5263_R3635
64.4
RHH5298_R3664
48.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
